SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17657c0_g2_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_TOX_high_mobility_group_box_family_member_3-like_isoform_X2_[Papilio_polytes]
Ontology
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006915 P apoptotic process
GO:0034056 F estrogen response element binding
GO:0042803 F protein homodimerization activity
GO:0043524 P negative regulation of neuron apoptotic process
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051219 F phosphoprotein binding
Transcript
Level		FPKM:1.43 TPM:1.40
ORF EntryO_TrvaFAMAMG21129_complete:A_TrvaFAMAMG_TR17657c0_g2_i2
Sequence
(Nucleotide)
CGCACGTGTGCACGAAAAATACAAAATAACTCCAGTATTACTACGAGTGATACCATTATA
CGCGAACTATTATTGGTGTTTTTAATTTTATTATAATGAACTGACATTGTGCCACATCAC
TAGTTTAACTTAAACGTAATGTATTATGAATAAATGACTTCAGTGCGCTACCAATTAAAG
TTGTAATTGTATTATTTTCTACTTCTTCCGCCGACAAATTGGATCTTATATGAAACCAGC
GTGTATTTTATATCCAGGACGCCGAATGACACAGTTTTTACATGAAATATTGGACTGATT
ATTCAAAAATTTAAATGAGACCAGAAAATCTTGAAGTACCCTTGTCCGTTCCTCGTGACG
TCAAGAATAGTGTGTACGCCATGAATGATCAGACTTTTCACACACCCTCATTTGGCGACG
AAGAATTTGACATTCCTTTAATTCATGGACAGCATGCTCCAGGGTCCGGAGTCACAAATA
CGCATATTCAGTATACACAATTACACCACGCAGCACCACAGGTAGGTATGATGAACCCAG
CACAAGACGGTTTGGCACCACCGGGAGGTGCTCCTTCATATCAACAACCACTATATTTAC
AAGAACCACATACACCTGTCACAACACACAGTGGAGCTGGTGCTCCGGCAGGGAATTACA
TGATTCAACAACAGCCTGGAGGACAACAGAGGTTGTTGATAATGCAGCCAGCACAAACTA
TAAGTGGACCACCTACCCCAAGCACTCCAACTCAACCATCAGGGCCAGTGTATGGTTCTC
CACAAAGGGCATCACCACCTGGAACCACAAGTGATGACTCAGACGATAGTGTACCTTCAC
AGCACTCACAGTTGCCTGGTGATGCGGAAAGCCTTCTGCCTATCCATTATTGCTCAGCGA
GCCGGCAGCAACAAACTACGCTTCATCAGATTGGTGTCGCTAACATGGCTGTTAAAAGAA
CATCACCTGATCCCATGGAAAGTGGAATGAACCGTGGACAAATACAGAAGAAGCCTAAGG
TTCAGAAAAAAAAGAAAAAACGTGATCCAAATGAACCTCAAAAGCCAGTGTCAGCTTATG
CATTATTCTTTAGAGACACTCAGGCTGCAATTAAGGGCCAAAACCCAAATGCTAGTTTTG
GAGAGGTTTCTAAAATAGTTGCATCAATGTGGGATGGATTAGATTCAGAGCACAAAAGTG
TTTATAAGCAGAAAACAGAAATAGCAAAAAAGGAATATTTAAAGGCACTTGCTGCCTACA
GAGCCAGTCTAGTGTCAAAGGGAGGAGAACAAGAGAATCAAGCTATGTATAACCACAACA
ACAGTGGCAATGTTTGTGGAGGCAACAATAGTGCCACATATGGTAACTATTACCAAGGAC
AGCCTTATGGCAATGGCCACTCTCCTCAGAACTATGTACAAAATACTACGCCTCAAGGAT
ACTCCCCGCAGAATTATCCTGCTGGTCAGCCTCAAGCTTCATACCCTGGGCAGCCTGCAC
AACAATATCCACCTAACTCTCAAACTCCTCAAAATTACCAAGGGAACATGCCAATCCCTC
AAACCTACCAGAATGTTCCAGCACCATCACCTCAGAGCTATCAAATAAGCTCTTCAACGT
CACCTCCAAATTGTCAACCAAATGTAGCGCAGTCTCCTAGAAACTATCAACCAACACCCT
CACCAACCAATTACCCTGCAAGTTCATCAATGTCACCGCCAGGGTACAGACAAGTACAAG
CTCAATCCCCACCAATGGGAGCAGTACATCCTGGCATACAATATCACCCTCAACAGCAGA
TGCAAACAACACACACACAGATGCAACAGACACAGGTACACCAAGTTCAATACCAACAAC
AACAGCAATCTCAACAACAACAACAGCAGCAACAAATGCTGCAACAACAACAAAATCAAC
AACAACCGATTTTACAACAAAGTCAGCAACAGCAACTGCTGCATCAACAGAATCAACAGA
TGATGCAACAGCAAGCCAAGCAGACACAAAATCAGCAACAACAACCACAGCAACAACAAT
GTCAACAACCGCCATTACAGCCTGTTAAATCGGAACAAAACACACCACCCACTAGTAATG
GACATCCTCAAAAAACAACAGAACAAAATGAAAAGAGGAGTAACCCTTGTATTCGTCAGG
GCTGTACTAATCCAGCAATATCAAACAGCGAATGGGAAGATGAGTACTGCTCTAATGAGT
GTGTAGTCAGCCATTGCAGGGATGTCTTTAGTTCTTGGGTGGCATCAAACAACAGCAATC
AAATGCAAAATTTTTCAGCAGTTAAATAAACATATCATGTAGAATTTTAATGCTAGTTGG
CCATGATCCTACTTGGAGTTCCATTGTTAAAGTACAGCCACTAATAGACATTTAAATCAA
ACTGTAATAATACTTATGATTAGAAATAGTATTAAATATTAATTTGTATACTATACTCAT
TTAGTGGTTAGTGGGCGAAATAGTAGTTGTGTCATTACTTTTGAAATTTAGAATCATGAT
ATGCACAAAATATAGAAGGATAAATTATAACACGTGATTAGAAACTATAGTGTACTTCAT
GCCATATTATTATGTTTCAGTAACTAAATAACTTCATAATTTGTTAAGCATATCATGATT
AGTTTCGTTAAATAAGGGTACTATGATTATAAAAAAGAAAGCAATAATTTCAGCCTTGAA
TTTGTATGAAATTAAACCTCCATACAGTAATCGTTAATATTATTATGTAGAATTAAAGTA
ATTGTAAATAAATTATTTTAAGCTTTATATAATTATAGTTGCAAATTAGACAATTGTAAC
TTATTGTTATGATCACAGAAATTGTATTATGTTACTAGTTTTAGTATAGTTACACGTTAT
TTTTTAATACTGGGTGGAAAATAAACATTTTGTTT
(2915 bp)

- SilkBase 1999-2023 -