SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17481c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_probable_helicase_senataxin_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000790 C chromatin
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006364 P rRNA processing
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0016180 P snRNA processing
GO:0016787 F hydrolase activity
GO:0017116 F single-stranded DNA helicase activity
GO:0031124 P mRNA 3'-end processing
GO:0032508 P DNA duplex unwinding
GO:0032575 F 5'-3' RNA helicase activity
GO:0033682 F 5'-3' DNA/RNA helicase activity
GO:0035649 C Nrd1 complex
GO:0043144 P sno(s)RNA processing
GO:1903623 P negative regulation of RNA polymerase III activity
Transcript
Level		FPKM:2.16 TPM:2.12
ORF EntryO_TrvaFAMAMG20862_complete:A_TrvaFAMAMG_TR17481c0_g1_i2
Sequence
(Nucleotide)
GCTTACGATCAGGTGGGCCGTTAGCTCGTCTGCCTACGTGGCAATAAAAAAAAAAAAAAA
GGTACTAATTAGTAATCAGCAAGGTTTGTGCTGTCTTCGACACGTTCACGTGAGATCGAG
ATATTGATCGGCAGATCAGCTGTCTGACAGCATACAGATCGTTCTAGTTTACAAGAATCA
GTGACCACAATAAAACAGGTTCGTTTTGATACACAATAAGCTTAAAAATCGTTTTTTAAA
TTATTATACAAGTAAATGCATCCTTAAGCTACCCTAACGCTACGTACACTCTAACCACTT
CAGTATTTGACTTATTTGACTATCAGGTATTGACTGCGATGTTCTGGGATGAGACATAAA
ATGTGGAAGTTCTCTGAACATATTTCTTTGCCGCGCGTCTTCTATAAGAGATCGCCATTG
AGGGTTATTCCGCGTGGCGTCGGGGTCGATGCAGACGAGCAGCGCGTGTCGGGCGCGCGT
CAGCATGACGTTGGTGCGTCCGGCGTGCGACAGGAAGCCGACGCCGTGCGTGCGCGCCAC
CGATACGACCACGACGTCTCGTTCTTGTCCTTGAAAACTGTCTACTGTATTGACCTCAAC
CTCGGCTTCGTCGTTCCTTCCTTGTAGCCTCTTGATGTTTTCTTTAATGAGATCTTTCTG
TAGGTTGTAAGGCGTGATGACGGCGAGCGTGAGACCGCGCTCGCGCGTGACCCTCGTCAG
CGCCACCACCAGCCGCGACACGCCTCGAGCCTCAGCGTCGTTTCTACCTATTACATTTTG
TGCGGCGTGGTCGTGCCCGGCGACGGCGAGGATGCAGTAGGGCGGCAGCGGCAGCGCGGG
GCGCGGCGCGTACTCGGTGCGGACTCGCGCGTCGTAGAAGGCGCGGTTGGGGTAGTCCAC
GATGGCGGGGTGCATGCGGTACTGGCGGTCCAGCAGCACCACGGGGCTGCGCGCCCACTG
CTCCGACAGCGACGTCATGCGCGAGAACAGACTCTCGCCCAGCCCGTGCTCTCTCGCTTG
CTGCGAGCAGATGTACCCCGGCAGTTGTTGCGGGTCTCCGATCAGCGAGACGTGCGTGAC
GTCGAGCGCCAGCGGAATCAGCGCTTCCGGCTCGATAGCCTGGCCCGCCTCGTCTATTAT
ACATAGTGCAATTCGTCCTTTCAATCCGCGCATCTTGTGGTTGAGCGCGCTGCCGAGCGT
GGTGACGATGACGTCAGCGCCCTCTATGATCTGCCGCTCCACGTCGGAGCGAGGCGCGCG
CGCGCCGCCCTGCATCATTTGAATTTTCTTGGAGAACTCATTTATTCGACCTTGACAGTA
TGCTATACGACCCTTATCTTTGGCACTCTCCATTGAAATTTTCCACATATTAATTTTTGC
TTCTAAAATTGCAACCTCCTGCGCGACGGCGGGCGTGTGCGCGTGCGGGTCGAGGCGCCC
CCCCTCCCGCAGCGCGAGTTGCTGCGAGCTGACGAGCTGGGCACGCGGGTGCATGGCCTC
GGCGCGGCCCACGCGGACCATGGCGAAACGTTCCGTTTTTGGTAATTTTTGTCTTATATT
TAATAGTCTGATCACAAGTTCATCAACTGCGGCATTGCTGGTTGCACATATTAACAATTT
CCCTCTATTTGACTGTTTTCTACTTTGCGCATCATAAAAATATGACTTTACTATTGCACA
AATTACACTTGATTTTCCTGTCCCTGGAGGCCCTTGTATCATCTGCAGACTGGGCTGTTG
ACTAAATGCAGACGATACAGACTCACATACTGCTCTCTGTTGACTATGGTTTAAAGTTCT
CATCCACTGTGCATTCATGTCAACTGCATCATTGGATTCAACTGTGTCAAAGTGAGCAGG
CTCTGGGTTCAATAGTGTATCACATAAAGGTGAACTTCTTAAATATTCTATTGCTTCAAA
TAATAATAGTTCTTTAGTAATTGAAGTTAAAGGTTTAACAGTTATGATATCACCTTGTTT
TAAAACACTAGTTTTGTCAGAGTATTTACCCTGCAATGATATACTGAAAAATGCATGCGA
ATTATTTGAATGTAAAGGAATTTGCCTTACATCTTGTACAAAGAAAAATCGTTGATCGTC
CAATGTTGAGTTTAATAAGCCAGTGATAACAATTTCACCAGTTTTTGGTACATTTTTAAT
TTCAGCTGATGGCACTTTATAATCCACACTTATATTGAAGAAATCACATGTAATATTTGT
AGCAGGTGGAGGAGGTACTGATTGTATCCTCATTTCCATGTCACTATTTTTATTGTCTAA
TTTTGAATATGCTAATGTTAAGCACTCCCATATCTCCACCAAAATAAGGTCACCTATCAT
TTTAACATACTGTTTATGATTTTCGAATTTATGAATAATAGGAACCAATGTTTTATTTTC
TCCTAATATTGGAGGAGGAAAGTTAAAGTTGTGTTGTTGCTGAAACCATACTGGAAGCCA
TCTCAGAATTTTAAACAAATTAATTTTATCAAGTGGGAATCGAGGTCTCTGTTTTATGTC
TATTTTATATGTTTTGGCAAACTTTGTAGCTTTCATTTGATTACCAGGTGCAATCTCAAT
ATGGTATACAATAGGTGCAGCATCAGAAAATCTAACTGATTTTTTTGTCTTTTTTTGTGT
TAGTGAATTAGAGGAATGAGGAATAGTTCTTTGATTTTCTTTATCATCTCTACTATTTCT
TATAGGTTTTGTATTTTTTTCACTTTTTGTTTCAGATGATTCTAATGATTTCTTACAGTG
TCTACTTTCATTACCCAAATGTTTCTTTTCATTTGGAAGGCCATCTACCACATCATTAGT
AATTGATTTAGTTTCTCCTTTTGGTTGTTGTTCATTTTGTTTCTCAGTTTTGTTTTCTAA
ACTAACTTTTTTTTCTTTTCCCTTATTTGTTACTTGTTTATCTTTATGTACAGGTTCAGT
CAAAAAGGCACTGCGATTAGTAGCTGTGTGTTTGACGTAGGTCGTGGATGATAAGTTATC
TGATGGATTTTTACTTTCATTCTGTTTAGTACTACTTTCGTCTTTGTAATTAACTTCTTT
TTTTTTCTCTGCAATTTCTCGCAATTTTTTTCTGCGTTTTTCTTTAACTGATTTAGAATC
ACTCTTTTGTGTAGATCTTTTAATATTGTCCTGTGATATTTTGGAATCCTTCTTAGTATC
AATCACAATAGCACAAGAAGTAGACTTTTTTCTTTTCACCTGTGGTTGTGGTTCTATAAG
TTTAATTTTATGATCTAATTTCTTCTGAACATTTGTTGAAGTTTCTGCATTTTTAACTTG
TCCTTTAACAGATTCATGTAGGTCTGAAATGTTTGTATTATTGATTTTTGTATCCAAACA
TTGATCTACAAGATTTGTGCTATTATCAATATGATCAGTTTCCTTCTCCCTAGTTTTAAG
ACATTTATTATTCTCTGGTTCTGCAACAGTTGTCAGTGGAATTGGAGATTCAGGAATAAT
TATAATGTCATCTAAAAATATCTCTTCATTGTTTTCATCAAATAAATCATTGAAGTAACA
ATCATCTTGCTGGCTATAGGATATGTTTTGTTGGTCTTCTTCAGGTTTGGAATCAGACTT
ATCTTTTGCCAAGTGTTTATTAAAAGAATTTTGTGAAAGTTTCCTACACCAATTCATATC
ACTATCAGAATCATCACTTATCTCTATTAATTCATCCTTGTATTCATCAATATACTCTTG
CTTGATATTATATGCTTCAAAGTTGATATTCTCCTGCATTGGATAATCAACATCAATTAC
TTCTGCATATTTTGAGTTAGTTGGAACAATTTGTTCATCATCATTAGTAATCTCTTCATC
ATTTTTTCTATTAATTTTTAATTGTATTTCCTCTTTTACATCTCCATTTAGTGATTCTTC
ATTTTTACGCTTTTGAGCTTTTGGGAATCTGTTGGTATTGGCTTGGTTTGAAGGAGTTTG
TAATTTTATATTTGGTTCAATATCACTATATTCTGTTTCAAATTTTATCTGATCAACTAT
AGATGGGCTGCATTGTACTTTTTGGAGTTTAAAAACATATTTTTCATTATTGTTTATTCT
TGCTAGTGGTGCTCCATTTGTCCAACCGAAACCAATGATTTCATTATTATTTACAGGGAA
TGGTTCATCAGGTGGAATTTTGTGCTGACCCACATACACGCCATTCGAACTCTTTAAATC
CTTAATAAATATTTGATTTTTTCCTACTGTAATAACACAGTGTTTTCTTGAGACAACAAT
ACTCGACAGAACCACTGAGTTTTCAATGCCTCTGCCGACTGATACTTCTTTGCCTTCATA
TAGTGTAAATTCCTCGTCTCCATATACATGTCTAATTAATTTCCATATGGACATTTTGAT
TTATTTAGTACACGAGAAAATACTGATAATATTTTAACCATAATTCAAACGTTTTCAGTT
ATACATCTTTGTTTTCAAAAAACTACATGACAA
(4473 bp)

- SilkBase 1999-2023 -