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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17433c2_g2_i7
Scaffold_id
NCBI non-redundant
(nr)		retroelement_polyprotein_[Lasius_niger]
Ontology
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0005575 C cellular_component
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:0.35 TPM:0.34
ORF EntryO_TrvaFAMAMG20549_5prime_partial:A_TrvaFAMAMG_TR17433c2_g2_i7
Sequence
(Nucleotide)
AATATATTACAAAAAAATCAAGAATAAAGAGAAAATCGTTTTATCAGAAAAATTTAGTAT
AAACTTTATAAAAAAAATACATATAGAATACTGTCACATTGGAATTAAACAAATGCAGAA
TAAAATTATACCATATTACACATCTAAGAATTTGAAACTGAATATAGAGAAAATATGTAG
ACAATGTGAAACTTGCATTATGAACAAATCAAGAGGTCAAAAAAAATTTGGTTTAATGTC
ATATCTAGGACCTGCCACACGCCCGTTTGAAATAATGTCTATTGACACAATTGGTGGGCT
GGGGAGTTCAAGATCGACAAAAAAATACATGCACCTCTTGGTGGATCATTTTTCTAGATA
TGCATATATTTTAAATTCAAAAACACAGAATTCAAATGATTTTATAAAACTTGTCCAAAA
TGTCACAGAATATGGCAATATTGGTATGATCTTAACAGATCAATACCCAGGAATAAATTC
AAAGGATTTTAAACTTTTTTTACAGGAAAAGAATATTTCAATTGTTTTTACTGCAGTCAA
TGCCCCTTTTTCAAATGGAATTAACGAAAGGCTTAACCAAACCTTGGTAAATAAAATAAG
GTGCAAATTAAATGAACAGAAGAAGAAAGTAGCGTGGACAACAATAGCACAAAAATGTGT
AGAAAGTTATAATGAGACGGAACACACTGTGACAGGTTTTGCACCGGTGTACTTACTACA
AGGAAAAAATATTGCATTTATACCAGAAGAGCTAAAAGAAAAAAAACCAGAAAGGGATTT
ATCGGCAGATAGAAAATTGGCACTGAAAAATAGTATAAAATCCCATAACTACAATAAAAA
GATATATGATCAAAATAAAAAACATTATCAGTTCAATGTAGGAGACATTGTATATGTGGA
AAATGGCAACAAGTTAAACAGAATAAAACTTGATGAGCTGAAAATTGGACCATATGAAAT
AATAGAGAAGGTTTCAAACTCAATATACAGAGTGAATACAGGACATAGGAAATCAGAATC
GAATCTCTTCCACATTTCCAAACTAATACCGGCTCCTGCACGTGAAGATGGTAGTTTAGA
GAGTAAACAATAAGATTTTATGCTAAAATTATCTCCGTGAAAGGGGGGATGTAAGATATG
ATTAGATCATCTCTTAAATTTGAATTAACCCGCGCTATTTAAAGCGCGAGTGAATAGAGA
ATGACAGGTGAATGAATTGTATGAGTGAAAGGAATGTCTAGGATGTAAACTGACGTTTTG
CAGATCGTTGATATTTTGAAAGTAAAATTATTGTGTGTGTCGAATAAAATACCTGAAGAT
TAGATTAGAGACGATATTTGTGAAAGTATAAGCTTTGAATGTTGTTTCTTTAATTACAGG
TAAAGTAATACTTGTTTTGTAACATGTACATTATGTAGTTAGGTTATTTCGTGTAAAACA
CGTGTTTTTAACAATAAAAAAATCTTTAATTACAGAAACGCAATTGAGTTTATTTGTGAA
TATCGATCACCTTATTTAAAGGATCTTATATAAATTAAACGTATTTAATACAAGTTATAT
TTAAAGTTAATATTTTTGATAAATAAAATTAGGCAGCTTCATCGAAATATCCATCCAGTT
GGGTCGCGATCTGTAATTTAATAAAACATAATCAAAGGAACAATAGGAATTCGAAGGAAA
TTTGCTCGTGTTTACTCAAACCTTCTACTGTAAATTCTTTTTGGAACGAAGTTCCTTATC
GC
(1742 bp)

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