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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17424c1_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_nucleolysin_TIA-1_isoform_p40_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006915 P apoptotic process
GO:0008143 F poly(A) binding
GO:0008543 P fibroblast growth factor receptor signaling pathway
GO:0010494 C cytoplasmic stress granule
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0042036 P negative regulation of cytokine production
GO:0044822 F RNA binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0097165 C nuclear stress granule
GO:1903608 P protein localization to cytoplasmic stress granule
GO:1904037 P positive regulation of epithelial cell apoptotic process
Transcript
Level		FPKM:0.75 TPM:0.73
ORF EntryO_TrvaFAMAMG20470_complete:A_TrvaFAMAMG_TR17424c1_g1_i4
Sequence
(Nucleotide)
GGTATATGGCCTGATTCAGAAGGCGGTCGTTCTTGACACGAGCACTATCACATTTTCGTC
GGTGACTTGAGCCCGGAAATTGAAACCCAGAGCTTAAGAGATGCCTTCGCGCCATTCGGA
GAGATATCTGACTGCCGCGTCGTTCGAGATCCACAAACACTGAAATCAAAAGGATATGGA
TTCGTCTCCTTTTTGAAAAAATCAGAGGCAGAGTCAGCCATCACATCTATGAACGGGCAG
TGGCTAGGATCCCGGTCTATTCGTACTAACTGGGCCACACGGAAACCACCGGCGCCGAAA
AATGAATTGAACTCGAAGCCTCTGACATTCGATGAGGTGTACAACCAAAGCTCGGCAAGC
AACTGCACGGTGTACTGCGGAGGTCTGACCACTGGTCTCACTGAAGAACTCATGCAGAAG
ACATTCCAGCCGTTCGGGACTATCCAGGAGATCAGAGTCTTCAAGGACAAGGGATACGCT
TTCATCAGATTCTCGACCAAGGAAAGCGCTACGCATGCCATAGTCGCCGTTCATAACACT
GACATCAACGGTCAGCCCGTGAAGTGCTCCTGGGGCAAGGAATCCGGCGATCCGAACAAT
TCGCAGGCTCAAGGACAATTGGGCGGGACTGCGTACAGTCCATTCGGGACCGCGTACACC
GCCGGCGGAGTGCCCCCTGCTTCGTACTGGTACAACACGTACCCGCAGCAGATCGGAGGG
TTCCTTCAAGGAGTACAAGGAGTCCAGGGGTACACTTACGCTGGACAATTCGGGTACCAG
CAGCAATATATGGGGATGGGCGGTGTTCAGATCCCGTGGGCGCTGGGTGGCGGTGTGGGT
GGTGTGGGTGGCGTGGGTGGAGTGGCCGCCATGTCTCAACCGCCACAGGTGCTTCACTAC
CCGGTGCAGCACTTTCAAGTGCAGCCCATCGGAGAGGATGAATGGCTCGCCCCAAGCCTC
CTCGTGTGAGGTCAACGACCAGCACCCACTGAGCCTGCCTACTGCTATTTCCAAGATGAA
TAACTCCCTTCTCCAACAATGTTTCTCCCTTGAAACCTGTGCAGACGATTATTTTGAAGC
TTAAAGTTTCCCACGACGTTTTAGCTTTTTACTGTCCTATAAGGTTTTTCATTTGGCGGG
CATGTGTGAGTGTGGTCGGGCTACAAGCCAACATATTATAATATTAAAACCTCAAACAAA
GAGGCATTTGAATAAAATGTGAGTCATTTTTATTTTCAACTGCTGCTTACGAAATTAACG
CGTAATATAATAAAAAAAGCTAAATAGTTAAGAGTAGAAAATAATTTAGATGTAAGCTGA
TATCAAAACACGCGGGCCAATGACGGTTGCGATTTTCGTAAATTAAAAAAAAATAGTAAG
ATTTTTCTGAGGTTCTCGTTCGAGTTTTATGAGTTCATTTTCCTGAGATTATGAGTTCGA
TGGAAAAAAATATGTTTGAATTGAAAACGTACCAAACATCAGCACAATTTTAGTGTAAGT
TTAGATGAAGTAAAAATTAGATTTTTGGAAAATGTTTAATAGAAGATAGAGGAGTTAAGG
CAACATTCAGGATTGCGAGTGAGAAATAAAAATTTTAAAAACATTTTATATACAACTTCG
TCTAGTCAAAACAAAACGACTATACTAAGACTTACTAGTCATTTTACGTTTATTTATTTT
ACTTATTTATTTAAAATCAATGCCAAATACAGAGAAGTAAATGACAAACATACTGTTATG
AGAAAGAAGGTTGTGTCTTAAATAATAAAAGAGATACATGAAAAAAATGAAAAAAAATCA
ATGAAAATAAAATAATGGAAATTTAGTGAAAAATAGATTTATTTACTGTATAGGTAATTA
ATTATTAAGCAAATGAAAAAAATATTTATTAATATTTGTAATTTTAAGGGCATTTAATCA
TTTACCGTAGTTAAGGCGACGGATGATCTGTTTCCGTCGCTTCCGTAACTTTAAATGGAA
TCTCCAGCTGTTCATGTTCGTGAATGTACGTTCATAATATATTAATTTCGTGCCTCGATC
TGGAGCAAACTCCTTACAAATACCAAACTGAATGGGCTCACGGAAAAGTGATTTAGGATT
CGAGATTGCGCGTAAGGATAATGAGGAACATGGACCTCAACGATATTTGTAACGAAACGT
AGGAGAGAAAGTGTAGCGTCCGACGGATTTGGTGAATCAAAGTCAAAGAAACTATGTAAG
ATGGCTGACAATACGCACAAATAGTATGACAAATGTGTGTCAGCATTGGCTTCACTTTCG
TTGTTCGAAACGCTACGCGGATCTTATTTAAAAATATAATGTGGTATATTGTAGAGGAAA
CTAGAATCATCTTTTTTGATATCTTTTTGACAGCGCACGTGTCTGTCCACGGCGCCTATT
GATATAATATTTTGTAAAAGATGTATTTTATACATTATATTCAATGTTAACGGGCGTTTG
AGTATTATTCGCCATTATGTATCGTATTATATGTGCAGTCGTATCGATGTTTTTTATTTA
CAAAAAATACATGGAATGCACGTGAGTCGGCTGTTCAGACGACCGCTAGCGTCGGCGTCT
CGGCAACGACTGCCCATGAATTTGGCATGATTGACAAAATGACGAGTATACTGACACGCC
CATATCTTTTGACTGTCTTTTATTTTGTCCATTCTGCTTTGGTTTTGCGTAGATGAAACT
CGATAAAACATATCGCTAGTTATTATTGATAAGATATTATATATGTATTAAAATATATTG
GAAGTAATTGTAACACATTTTTTCCGGTTTAAATATATGAATAATAATGTCAATTTGAAT
GATATGGTCAATCAATGAAAAATAGAAATCAAAGTATATTTTGT
(2864 bp)

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