SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17413c1_g1_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_DNA_repair_protein_XRCC1_isoform_X1_[Bombyx_mori]
Ontology
GO:0000012 P single strand break repair
GO:0000724 P double-strand break repair via homologous recombination
GO:0001666 P response to hypoxia
GO:0003684 F damaged DNA binding
GO:0003909 F DNA ligase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006284 P base-excision repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006297 P nucleotide-excision repair, DNA gap filling
GO:0006974 P cellular response to DNA damage stimulus
GO:0010033 P response to organic substance
GO:0019899 F enzyme binding
GO:0042493 P response to xenobiotic stimulus
Transcript
Level		FPKM:2.22 TPM:2.18
ORF EntryO_TrvaFAMAMG20321_complete:A_TrvaFAMAMG_TR17413c1_g1_i3
Sequence
(Nucleotide)
GCAAAACGTAAACAAAAAAATCAAAATACAAGAATCAACTTGAAAACTCAACTAAAACGA
TGGTTAATTAATACATTAACCAGAATATAAATATCTACTTTGGAACAGTTTGATTTGTGT
TTTAAATAACTTTTGTAATAATTAGTGAGTGCTAATCAAAATGCCGCGAGTGAAAATCGA
CTATGTTGTGAGCTTCAGCAGCGAAGATCCTAGTCACCCAGCTAATAATCTTCTGGAGCT
GGATGTGAGTAAGAAGAAGTGGTTGTGCTGCAAGGGAGAGACATCTTGCTCTGTTGTGTT
GCAGCTGGTTAAGGCTGTCAAGATATCGTCAGTGAACATCGGTGCTCATCATGCGGCCAT
GGTGGAAGTGCTCGTGGGAAGGTCGGAGAAACCAGATGATCCATATGAGGTACTAGTCCC
GAGCAGTATTCTGTTATCTCCTGTGGAGTCCCGCCGCGAGTCGGGGCTGGATCGCGTGCG
GTCGTGGAGCGCGGCGCAGCTGCAGGGCGGGGCGCGGGGCGGGGCGCGCGAGGGGCGCTG
GGACCGCGTGCGGGTGGTGTGCACGCAGCCATACAACAAGCACTGTCAGTTTGGTCTCTC
ATTCATCCGTATCGAAGAGCCGGGCGACGCCCCGGCCTCCGCCCCCGCCCCCGCTGTACC
CTCGCGGCTCCTCGCCGTGGACACCTTCTCATCAGACGAGGAGGAGTTTAAGCCGGGAGA
GCTGTTCAGTCAACGGAGCCTAACTGACAGTCAGAACACCGGGGACAGTGAGGGTACTCC
CAAACAACCTAGTACAGAATCTCAGATCCGTAAAGCGTCCTCCCACGCCCTCAGGAACAT
TCCAGACACTTCCACATCACTCCACACATCGCACATCAACAAACCGCACGGACATAACAA
TCAATCTGTGGCACATACAGACAGAACCGGGGACAGGCTGTTGTACGACGAGGACGATAG
TCGACCGCACACGAAAATAGACCGTGTTGTTAGTAGACATAAGGATGATAAGGCTTTGGC
GGATAAAGGTGGACTGCCACCAAAAAAGGATGACAAGAAAGATAAATTAAACGTAACACC
AAAGATAAAGGATAAAAAAGATGTACCACAAGCATCGCAATCAAATAAAAAATACACCAA
TTCACCGCGAGATCAAAAACATGGTCACAATAGCAGGAAAACTGATTCTAGTGAAAAGAA
AGATACAGGTGTAAAGCTAAAAGCAGGTCCAATAAGCAACAGTCCCCACACCCTACTGTC
CGGTGTGGTGATGGTACTAAGCGGGTATGTGAACCCAGAGCGACAGAACATCAGACACCT
TGCCACCTCGCTCGGGGCGCGCGTCCTGCACGCGTGGGGACCCGACTGTACGCATCTCAT
CTGTGCGTTCTCTAACACCCCAAAACTGAAGGAGGTGCGAGCGTCGAGGGGCGGGGACAG
GATCCCCGTGGTGAGGGGGGACTGGGTCGAGGAGTGCTCCAAGAGCAGGAGGCTGCTGCC
CTGGCAGTGGTTCGCCACTGAGGACAAGCACAGACTACCCAGGGGACAGATCGATGATGA
TGTTGCACAGAGTAATGAACCAGATACTGACGAAGGCAACGACACGGACGACGAAATAGA
AAAAGTCATACAGAAAAACAAACAAACAAAAGATTCACCAACACATACAAAAAAACGACC
TCTCTCCCCTACATCGAGTGACAACAACAAGAAACAGAAGCCCAACGATGATATAAACAT
GAGTGGGAGCTCTGACGTGCAGTTTGTTTGTGACGAGCGCGTCAAGGGAACACTTACTAT
CGACTCGGACAGCGACCAGACCGACGCGGACGAGCTGTCCGACACCGAGTATACGATAGA
CAAGAACAAATGTCTGCCGTCGTTCTTCGACGGAGTGACGTTCGTAGTGGACACGCAGGA
CGCGGCGCTGCACGCGCGCTGTGCACGCTACATACACGCGTACGGGGGACTCGTACTGCA
TAAATGTCTGGTAGATGAAGAGAGTGAAGTGGACTACGTGGTGTGTAACGGTGACGGCGA
CGGTCAACCCGTCAACGGTCAAGTGGTGACCACCGACTGGCTGTGGCGGTGCCATCAGTC
AAGAAGAATGGTTCGACCCTAAATAGGATGTGACGTTGTTGATTTAATAAATTATATTGA
TTTTAAAAAAAAAAAAAAAAAAAAAAAA
(2188 bp)

- SilkBase 1999-2023 -