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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17121c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_KGM_20642_[Danaus_plexippus]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000784 C chromosome, telomeric region
GO:0000993 F RNA polymerase II complex binding
GO:0001711 P endodermal cell fate commitment
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0006378 P mRNA polyadenylation
GO:0007049 P cell cycle
GO:0008285 P negative regulation of cell population proliferation
GO:0010390 P histone monoubiquitination
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0019827 P stem cell population maintenance
GO:0030177 P positive regulation of Wnt signaling pathway
GO:0031442 P positive regulation of mRNA 3'-end processing
GO:0031648 P protein destabilization
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0033523 P histone H2B ubiquitination
GO:0045638 P negative regulation of myeloid cell differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048147 P negative regulation of fibroblast proliferation
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0071222 P cellular response to lipopolysaccharide
GO:2000134 P negative regulation of G1/S transition of mitotic cell cycle
Transcript
Level		FPKM:8.24 TPM:8.07
ORF EntryO_TrvaFAMAMG20062_complete:A_TrvaFAMAMG_TR17121c0_g1_i2
Sequence
(Nucleotide)
ATTATATTGTCTTTTTTGTGTAAATTACACGAACGTGTCGCGTGGTGCAGCTAAATCACA
AGGTAAACTAAAAAGAAAAACAATTATATTATGTCCAACGATTTATTACAGTCAATACTC
AAAGATCACAGATCTTCCAATATTACTATACCATTTAGAATGTTCTGGCAACATTTCAAA
CAATTAGCGTCTCATTACACACGTTAATGTTTTTTAAACAAGAACATTATGCGCTAAATC
TACCCACTGTAGTTAGTTTTAGATCTCAAGGTTTAAAATTTAAATTATTTAATTAAATTG
TGGTTTTTGACTTGATGACAAAAATATCGAAATATTTTTATCAGTAACACTTAATATAAT
ATTATTATTTTGAAGAATATGAAATGCAACGAACATTTGCGATAATATAATGTTCTAATT
AAATTATAGTTAAAATAACTAATCAGTCAAACAGAATAAAATAAGTGCTGTGCAAGTGCA
AGCAAGTAGCAAAGTATTGTGGAGATGAACTTAATTATTTTTAGCATAGACATTATTTAT
CAAAATGATAGCGAGAACTCTAGTCTAGATAACTATACGTTCATATCCATCAATACTTTG
TTATTAACACATAAAAAATTCTTACTGCCTAATCCTGAATGTTTGATGTATCTTTGATAG
ATTGAGAAGTTCATTAAGTTTATTTGTTACAAAAACCTCTGCGACTTTATATTTAAGTTT
ACGTCTATACTCGGATAAAGCTACAAGCTCTAGAATATATGATTTTATTGCACTAACTAG
ATAACTTGAGATATGGACTATAAAAAAACAAATAAATCTTAAAGTACACAACAATTTTGT
CTACATTATAAATGTCTGTATTTAAAATATCTAGAAATGCGCATTAAAATCTAGACACAA
TAATAGGTATCTATTTCATTAGACATCAACAACTGCAGTAACAGGTATAAAAATATACAT
TTGTTTGCCAAATCATACATTAAATGGTATAATTTCAATTCACTACTAGTGAAGGCCTTT
TCATATTCACATAATTAAATAGACTATCTACGTAATACCTACAATATAATTTAAAATCTA
AGATGCGGTTTATTCTTCATCATATGCTTGTCAAGTGTTTCCCAAAAGCCGAGCAGCACA
GCTCTGTCCAAATGTCGTTTGGTGCGACTGAGTTGTAGCAGGGTGACGGCCCAGCGCGCT
ACGTTCGCATCCAACTTCATCTCGTCATATTTCAAATGGAAGGCACAAATGTTATCAAAT
ATTTGAACTGGATTTCCATCCCAAGGCCATCCTTTAAACTGCCACGCGGGACCCTGTACG
AATACTGCTACTACTCTATCCCATTCTGCTGCTGACAGCCTGCCTGGGTTGTCCACAACT
CTGTATGGCACCGTTATTGTAGTAGCATTAGTTGGTATTTGATCGCCAGTTTGTCCTTTC
CTCCTCTGTAGAAGCACTTCATTCTCACGAGCTGCTCCTTCTGTTTTTTTCTGTTCCACT
GTGACAAATTTGAGTTCCTGCAGAATGTCTTTAACGTTGAACATGGATATGAGCGATGTA
GCTGCAGCCGGGATGATGATGATTGGCGTGCGAGACGGCCGCTTGCCTCCCGACGGCACG
CGCGCCGCTGCAGCCGGCAACAACTCGCGACGAGGCGTGCCCGGCATTACTGGACCATTC
TGTGGCATTTGTCGTGGATGATTGGGTGTTTGAGGAGCTCTAGCCGCTGCTGGAACACTG
GGACCTTCCGTCACGGACTTCAGTGTCATACCATGGTAGGTACCCATAGTGTCGATCTTG
AAGCCTTCCGTTTCTTCCTTTTGACGAATAAATCTTTCTTGATCGTATCTGTTATATTGT
GTCTGCTGAGCTGGTAACACGGCGGGCTGTGGCATTATAACCGGTTGTGGTCTGGGAACA
CCAGGTCTGCCCTCCTCTCTCGCTTTTATACTCGCCAAATGAGCAAATATACTTTTTGCA
AACATTTTCCCATTACTCTGTAATACTGTTGTTCGTGTCCTCCATTGCCTTTCCCGGCTG
ATAATATCTTTGGTAAGATCCACATCGTAATCAAGAATAGCTCTCAAGTCTGACCCAACG
ACACCCAGCGTATCAGAATAATCATTACTTTTAATTGTAGTTCTTTTCTTGGCTAAACGT
TTTGCTTTAATTGCAGCAATTTTTTCCACTGACATAGCCTCCGACAACGATTTGATATTG
TCAACAGTGACAGAGGCTTCTTTAGGGGCATCGAGCCTAGCTGCAAGTTGTTCTCTGACT
TTTTGAACATGAGTTTCTTCAATACGAGGTTTCTTAGCAGCCGATTCTCCTCCATCATTG
TCATGGGTGCGCTTAACCTGGGTTGGAATTTCCAGAGGTGCACTCTTATCAATTGATGCA
CAGGTAGCAGTTTCGCCATTTAGATATGCTAATAATTCTTTACGGTCAGGACGTCGCACG
GGAGGTATATTTGCAGCAGCAGCTTGTCTGACATACACCGGATGGGTTAAGTGAATGTTC
TTGAGGATAAAAAGAAGGCATTCTAGGGTATAGTACTCTTTAACACTTCCTTCTTTCCCA
GATCTCCAAATGAGATAATTTGTCTTGACATTTTTGGGCCAAGAAAACTCACCAAATATA
ATTTGGTTATCACGTTCAATAATTTCTCTTTTATTTACGTTATATTGACGAAGTAAACTG
AGTGGATCGGCCATGATAACTTTGCACTCGTTTTTCTACAACTCCGAAGTCAATTGTTGT
TGAATAAATTGTATACTTCGCCAGATTTAGAAGAATTCACTATGCATTACACCACAACAA
AATACTTAACGATAATAACGAAAAACTATTTACACTTCATGCTCGTGGACACTTTTCTTT
TGGTGATGTGCATGAATGAACGAAACAAAACTTGAATCCTGATTTTTA
(2928 bp)

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