SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17103c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_tRNA-splicing_endonuclease_subunit_Sen34_[Papilio_xuthus]
Ontology
GO:0000213 F tRNA-intron endonuclease activity
GO:0000214 C tRNA-intron endonuclease complex
GO:0000379 P tRNA-type intron splice site recognition and cleavage
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0006388 P tRNA splicing, via endonucleolytic cleavage and ligation
GO:0006397 P mRNA processing
GO:0008033 P tRNA processing
GO:0016829 F lyase activity
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:2.62 TPM:2.56
ORF EntryO_TrvaFAMAMG20010_complete:A_TrvaFAMAMG_TR17103c0_g2_i1
Sequence
(Nucleotide)
CTAAAGTTATTTATAACCCTATAAAGTGTAGAACTGAGAATTGAGATTCAGAATTTACAT
TGTAAACAAATAAAAGTTGGTTTAAATTCTACCTCTTACACAGATTTTATAATACAATAA
AATGATACCAATATATGTTGAAAAAGGTATTGGATACATATGGAACCCTGAACATTGGTT
CATTTTACGTACTCAACATAGGATATGTTCCGCTTTGATTGGCTCGGCACCGTCGTTTCC
AAGGCAAAATGATTTTTTAGGTCTTCCGGTGGCATTATCTACTGAGGAAACAACATTATT
AGTAGAAAAAGGAATATGTGAGCTATATGAAATGCCAGTTGAATTTAAAAAATATATTCC
ATCAGAAAAAGATAAAGAATTATTGGAAAACTTTTTACAAAGAATATTACAGCAGCAACA
GTCAGCCCTAAAGAAACGTAAAATAGAGCAATTATCACAAAAAATTGACCTCATTGTTGC
AGGCAAAAAGAAAAACCTTATCAATAAAGGCATTTCTGATGTAAATATTGACAAAGATGT
AATGTTAGAAGAAGAAATAAAAAGAATAAAAGATTTGGATCCAGATCACAGATTAATACA
AATACCACAAGAAATGTACAGGGATATAGAAGTCATTCCTGTTAACTTGAATATACTAAA
ACCAAGCATTTTGGAAGGAGATGGTGCAATAAAATATTTAATATTCAAAGACTTGTGGGA
AAAAGGGTACTATTTAACAAGTGGATCAAAGTTTGGTTGTGATTATTTAATTTATCCAGG
TGATCCTGTACAATTTCATGCATCACACATGGTCAAATGTGTTAGCAATTCAGAAAAAAA
GTACCATCCTACAAATTTAGTAGCATTTGGAAGATTATCTGTAGCTGTAAATAAATATGC
AGTATTTGCGTTTGGTACAAATTGTGGAGAAATCTCATACCAAACATTACAATGGCATGA
TAGCACTGAAACTTGAAAAAAATGTTATTTTACAAAATTTACTAAAACAAAAAAATGTTA
CTTGAGTTTATTTCTCTATTTATTCTATTACTTTATTTATGTATTAAATAATTTAACGCC
TAGGTTTGAAGCTTCAATTATTAAAATGTCTAGAGAGAGCCTAATGCGTGGCCAAAAACA
GGCCAACTTTTGATGGCTAGTCTGTGTGACACACGCTAGTTAACGTGAATTTTACGATCC
GAAACAAATTATTTGGATATCTTAGAGTATATACATGTCATAATCAAAGTTGGATATATG
TATAAGTAGTTTTTATATATATATATTTTTTATAGTAGTA
(1300 bp)

- SilkBase 1999-2023 -