SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17073c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		Vacuolar_protein_sorting_[Operophtera_brumata]
Ontology
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0006810 P transport
GO:0006904 P vesicle docking involved in exocytosis
GO:0007032 P endosome organization
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016192 P vesicle-mediated transport
GO:0030123 C AP-3 adaptor complex
GO:0030136 C clathrin-coated vesicle
GO:0030897 C HOPS complex
GO:0031091 C platelet alpha granule
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0032400 P melanosome localization
GO:0032418 P lysosome localization
GO:0035855 P megakaryocyte development
GO:0048471 C perinuclear region of cytoplasm
GO:0055037 C recycling endosome
GO:0061025 P membrane fusion
GO:0070889 P platelet alpha granule organization
GO:0071439 C clathrin complex
GO:0090330 P regulation of platelet aggregation
Transcript
Level		FPKM:5.53 TPM:5.42
ORF EntryO_TrvaFAMAMG19951_complete:A_TrvaFAMAMG_TR17073c0_g1_i1
Sequence
(Nucleotide)
ATTATTGGAAAAAAAATAGTTTTAAAAAGTTACGCCATCTAGCGAATAGTGAAGTTCCCA
GTTGAATGGTTAATCGTAAGTGGTTACTGTCGCTCATGGACCTCTGAACGTAAGAATACA
CTAATCTATGTCATGTTTTTACGCGCGATCGGCATACTTTCAATTAGCTTCACTTTGTTG
TTCATGATGTTTCCAAATGTTTCCATGACATGCACACTAATACTTTTCATCAGATTATAA
TTCCTTGACTTAGCTAACACATAGTTTTTTAATATTAGTTCTACCATAAGATTACACAAT
TTAATTCAAGACTATTATCATGTCCGTTTTTATCCCCTAAAGGTATACAGAATTTTCTAG
AACTAGAATGATGCACAAACCTCATATTATTTCTATGTAATTTCTAACTGTATGTATATT
TTTATTTATGTATTATTTTAATATCTTGTATGCCTCTATGAAGGCATAGACCAACGGCAT
ATTTGAAGGTGTTAACGGTCCTCCGTTTGTCAGTCGGTGGGTTACTTGATTAATACTAGC
TACAATATAATGAATATGCAGATCATGCAATCAGCATTGTTTATAATATTGTAGTTCTGA
CCATTTCTACAAGGGGCGTAATTACCCACATTACAATCATATCACCTAATCCATCAAGCT
GTTTTACATGTTAGCTGCCATCAAATCGCAACCATTCGACACAGAGTCGCTTGCAATGTA
AATCTTGCTGCCAGTATTGGTTTGAACTACCTCGCAAGCCGCAATCTCAGCGTAATTCAC
ACCGCCAATAACATACACCAACACACTCTTGGTTCTTAGAGGAAATAGATTACAGAAATT
CGGATCGTTTTTGAAAACCTTCGATATATTCTTCGGGTCTTTGCAACCAAATTCTAAATC
ATTTGATACTTTGAGATTCGATAATTTCTCATTCAACGTTTCGACGCCATTTTTTAATTT
CTCGTTTACTTTACCGCCAATTTTAAAGTCTGTTAGCGTTGATAACTTTGCTAAGACTTC
GTTGAGATTCTCCGAGGTGAGGATTGTGTTACATAGGACTGATATTAGAGGTATGTATCC
GCCGTTGAAAACGTAGCCTGGTAAAGACTTGCCTATGTCATCAGGCTTGGATGGTAGCTG
TTTTAATTTATTTGCGGCAGTTTGGAATTCATTCTGCCATTTTGGTAACCTATCGCTCAA
GTTACTTAAATTAGAAATGTTTAAGGAAAGTTTTATGTTAGAGGGCTGAATCAAGAGCCC
AGAGTTGATGAGATTATTAAATACGTACAAATACTTGTATCCGAATGCTACAAGGTATTT
ATTGACTAGACTATTATATTCTTCATAAGTTAAACTTTGCGTTAAACTTAGCAAGCACAT
CAAACGCAAACTATTGTGTATGTGTATGTCTGTACCGAAATTTTCATCCACAAAAGTAAA
ATTGGACTTTTTATTCCTATTATTCAACATTTCAGTCTCAGTAAGTTTGAGATTCTCGAA
TTTGTTGCTCATTTCCGATATTATTGTTTCACAGGCCAACACATGGTTGACTAAATTCTG
TTTGAAGAGAGTTATTTGTTGCAGTTTCGTTGCAACAAAATGTTTTATCTCCTGTATACC
TAGTGCTTTTATATCCTCGTTTTTAAGGAGTTTAGCTTTTGAGCTGAGAACACTGAGGAC
TTCAGAGAAATGCCTGTGCTTAATTTCTCCGTATAAAGTATCGATAGAACTATCTAAAGT
CATGATCGTATTTTTACTTTCGTTGCTTGGTTCATCGTCAAAATTGAATTTCCCTTTCTT
CAGTTTTGTATCTTTGACATTCAAATCTAAATGGCCGCAATTAATATTAAATATCTCTTT
TAAAAGACCACTGTATGTCGCAGGAGTCAGCAAACTTGATGCATAATCTTGGTTTCGGTC
AATCACTATCAATGCTCCGATATCTCTAGAATCATCCGAGTCTGAATAGTCTCTAGAATA
AGTTTCATTGTAGATTTCCAGCATGTCCAAAACTCCTGCCGATAATTTCCCTAACGAGAA
CATGGCCTTTGGTCTCCCTATTACGTGAAATAACGTCCATAAAGACATGGCTACACTTGA
GAGTAAGGACTGATTTTGATCAACATATAACTGCTTAAATAGGAATGGTAATTCTAAGCT
TAATAGCTGGTCATCTATCAACATGAGTTCCCAAGCAAACGGATGTAATTTCACAGCTCC
ATACAACCCCTTGCTTTCCAAAATGGAGTCAAACGAGTTTAAGACTTTCGGTACAATTAT
GATGTGGAAGCAGTTGATATCGACCAGCAGCGGGTTTTGACTGATGAGGGACGAGATCTG
GTCAAGGACACATTTGTATTTGATTGCGCATGCTGGTATGAAGTACACCCGGTTTGCGTT
TGCTGTTGTGCCTAGTTGAGGATCCATTTTGTATATTTTGTCGATTCCATGTAGCCTGAG
CCACGTAACTCCGCATATTCTTTCCAAAGCCTTTATCAACGACGGGTCAATAATTAAATC
CTTCTTCTCTCCGCACTGATTCAAGATATTCTCCAATTTCTTTTGAGAAATGAGACACAT
AGAAGAAAATTTCAAGGCAAGAGGTGGATCCATTTTGATGGAACTTTTATGCCGTAAATA
TGATTTTAAAAACCGTATGAATAAGCCTGCATTTTGTTTAATTAATCTAACACTAAAAAT
TCTAAATAAATAATTTCTCTACGATACGCGACTGCGAGCGGGAGAGTCCCTGTAATGTAC
GACCACGGAATGCACGGACCCGGAA
(2785 bp)

- SilkBase 1999-2023 -