SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR16978c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_LOW_QUALITY_PROTEIN:_peptidyl-prolyl_cis-trans_isomerase_E_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0000413 P protein peptidyl-prolyl isomerization
GO:0000974 C Prp19 complex
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003755 F peptidyl-prolyl cis-trans isomerase activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006457 P protein folding
GO:0006909 P phagocytosis
GO:0016853 F isomerase activity
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.51 TPM:0.50
ORF EntryO_TrvaFAMAMG19795_complete:A_TrvaFAMAMG_TR16978c0_g2_i1
Sequence
(Nucleotide)
GTACGATTGAAAATTACTTACTTTTTAGTTCTCAGTGTCGTAAATTTAATGGACCCGATA
AATGACAAATGCACAGAATGTCTGTCAAAAGTCACAAATTTTAAAAAGGATACAAAATCA
GGTATAATCCTGTGAAAACTACTGCCTTGATAGCCAAATCCTTTCTCGTGAGTGCACAGA
GACCTGAAATTCTCTGCTGTTTTCGGTACAATATCCGCTCGGAGCATCATTATGATCCTG
CCCATTTCTTGTTTGTTCACACTGATGTCGAAGTACACTTGTGGGTTGCGTTTTTCTGTT
GGTTTCGTTGGTATAACAGTGGTCGCCTCAGTTTGGTCCTTAACTTCCGGTTCTTCGCCA
TCTTTGTTCAGTTTTAATGTCTCTCCCGCATGTTTCTGCAGCCATGTGTCATCAGACCAG
ACAGGGCGGGTGGAGCCTTCCTTGATACGCTGCGGTGCTGCTATGTTCACTCGTATGGTT
CTACCGAATAGTTCTGAGTCGTTCATGTTATCTATTGCAGCTGCAGCGTCTTCTGCGTTC
TCGAATTCAATAAAAGCGAAGCCCCGGTGCTTCTCAGTCTCATAATCTAAAGGTATTTGA
ACATCAACTAAATCTCCGAACGGTATGAAAGCGGCGTTTAAAACTTTTTCATCAACCTCT
TCGGCTAATCCTCCTACGTAAATCGTCCTCTTGGAATTAGGTTTACTAGACATTTTTTGT
ATATTTATTAAGAAATTCCGTAATTTTAGCGGTTTGTTTTCATAAATATAACCTCAAATT
TTA
(783 bp)

- SilkBase 1999-2023 -