SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR16638c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		U6_snRNA-associated_Sm-like_protein_LSm4_[Operophtera_brumata]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000932 C P-body
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0002230 P positive regulation of defense response to virus by host
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005688 C U6 snRNP
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0033962 P P-body assembly
GO:0044822 F RNA binding
GO:0097526 C spliceosomal tri-snRNP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
Transcript
Level		FPKM:13.36 TPM:13.09
ORF EntryO_TrvaFAMAMG19571_complete:A_TrvaFAMAMG_TR16638c0_g1_i1
Sequence
(Nucleotide)
TGTCAACTCAATAACCTCAAAATTGTAACCAAATCATAAACATTTTGGTAAACTACATCA
AAATTGAAGAAAACAAACACTATCACATACTAATCAAGATAATATTATTAAAATGTTGCC
GCTTTCCTTACTAAGGACAGCACAGAACCATCCTATGCTCGTCGAATTAAAAAATGGCGA
AACCTACAACGGTCACCTCGTAAGTTGTGATAACTGGATGAATATAAATTTACGTGAAGT
GATCTGCACATCCCGAGACGGTGACAAGTTTTGGCGGATGCCCGAATGTTATATTCGAGG
TAGTACCATCAAATATTTGAGAATACCGGATGAAGTTATTGACATGGTGAAAGAGGAAAC
TCAAGTAAAAGCCCGCGGCCGAAATGAACTTTCTAAAGGACGTGGTCAGAATATGAGGAC
TGGTGGCCGTGGAGGCGGCAGAGGAGCTTTCGGCAACCGCGGCAGAGCACCTCCGTTGGC
TAGAGGAGGAGGGAACCCGCGACCACAAAATAAAAATAAGAAATAATTTATAGTTTTTTT
TTAATAAATTAAGGTAATTTTGGCTAAGGAAAAAAAAAGAAAAA
(584 bp)

- SilkBase 1999-2023 -