SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR16311c2_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_nuclear_pore_complex_protein_Nup160_homolog_[Papilio_polytes]
Ontology
GO:0000724 P double-strand break repair via homologous recombination
GO:0005487 F structural constituent of nuclear pore
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0007184 P regulation of SMAD protein signal transduction
GO:0015031 P protein transport
GO:0031080 C nuclear pore outer ring
GO:0051028 P mRNA transport
Transcript
Level		FPKM:0.66 TPM:0.65
ORF EntryO_TrvaFAMAMG19049_3prime_partial:A_TrvaFAMAMG_TR16311c2_g1_i2
Sequence
(Nucleotide)
CGGCGGCGCGTGCGTGCGGCGCGGGGTTGGCCACGGCGGCGGACAGCGCGCGCGACGTGC
GCCCGCCGGACAGGTGCCACTTGAACACCACCCACTGGAACATCGATAAGTTCGGATCGT
CTTTGTCAGCAATACTGATTGCTGTCTCCGCGAGACGAACCACGCACGCGCCTTCGTCGT
GGATCTCAAACAATTTTATAACCTTCATGTAATACAGCACGAGTGCTTGGTGCTGCGTGA
GCTGCGCGGCGGGCTCGGCCACGAGGTGCCTCAGGAAGGGCTCGGTGCTGACTCCCTTGG
CGGCGCGACAGAACGCCGTGTACGCGCCCTCCGTGTCCTCCGCGTCTAACAACGCGAGCC
CCATTATGAATTGACGTGAGCATGCATTCCATTCACACCAGGGCTCGAGCATAGTAACGT
ACGTCTGCACGAGTCGCGGCTGGTTGATCCGCGCCAACCACCAGCCGAAGTCAAACCCGC
CGCTAACCGCCCAAAGTTGGTGCGCTAGATGGTAGAGGTAGTGCGGTAGTGCGTGTTGCC
AGGCGGTGTGCGTGTTGGCGGCGGCCAGGTGAGCGCGCGCACGCTCCCCGCCGCGGCCGC
GCGCGTACGCGGACACCACGCCCCCCGCGCCGCACGTCGCACCCCCGCCCCCGCCAGCAC
TGCACGCCGCGCCGCCCAGCACACTCAGCTTTAAACGGAACAGCTCCGACGGATTTGAAC
TGGTGTCGTTGTGCAGGGGCGCGGCGTGCAGCCACAGCAGCGCGCGGTAGGCCTGCCAGT
GCACGGCGCAGTGTCCCGCGCCCGGCACCGCGCCCGCGCCGCGACACGCCCCCATCGCCG
CCACCGCGCCGCGCACCACGCGGGACCTCATCTCAGCCATTTGACGAATAGCTTCAGTGA
CTACAGCCACGCCTAGATCGCTTGCAAATAAACTGTCATAATCGTTATCATCATCATCAC
TTCTTGATATTTCAATTTCTGGGACATCTAATCGTAGCGCATCGTTCAATTCAAGCACAG
CACTTTGGAGATCTTTTATTGGCTCTAAGATTGCATTGAGTTCGTTGATTTGCTGAGGCG
ACAAAATCGGCGGCGAGTGCAGCAGATGCAGCAGGCGAGGCAGCAGACGGTGCTGCGGCG
CGGCGGCCGCGAACAGCTGTCGCTCGAGCACGTGGGCGCGCGCCGGACTCGCCGCCCGCT
CCCACTGCGCGCCCGCCGCCACCACGCGCCGCGCCGCTGCCGACAGCGCACCCAGCCACG
TGCCGGTTCCAGATTCCAGCGTGTCTTCAGGTGAGAGCATCATTCGTTCGAGCGGTTCCA
GCTCGCACACCAGCGACACGCCCGAGCGACGCACCACGGTGCACCACCAGCCGCTCTCTA
CGTCTGCTGAACTATCTGACACCATCAACCCAAGAGGTTTCTGTAATCCTTCCATATACT
GCATACACCAGCTGTACAAATCTGACCAGCATTTGTGCATGAGGAGCGCGTGGTCGGCGG
GCGGCGCGCGGGCGGCCTGTGTCCGCAGACGGGCCAACACCGCCGCCATGGCCGCCTCGC
CCAGCTCCTCCTCCGCCCCCACGCCCGCCCCCGTCCCGCCGCACCACTTGCGGGCGTAAA
TCACCAAAGCTTTCCTAATGACTGAGTGCGGGAAGAGTCCGGGAGCCAGCAGTCGGTCGC
GGTACTGGTTGTGGTTGGAGAGCTGCGACAGCGGCGGGGGCGGCTCGCGACCCGCCACCG
CCTGCCACGACACCTCCGCGCCTACTGCACTACATGTAATTATGGTGTCGCCATCGGGTT
GACTCCAAAGCGCCCAAACCACGTGATTGTTATCTCCATAACCTATTTTATAGTCTAAAA
GATCCAACTGCAACAATTACACACAGAACAGTAAGATTAATGTACGCGTGTTGCCTACAG
TTCAATAAAGCCATTAATCTTCGGAATTAGTGATAATAGGCATGAGTACAGTATTAAATA
ATCGAAGATTTTATGATATTAGAGAAAACTACATATTAAAAGGATTTACTACACTGCTTT
GGTTACTTAAAAATTTGGGAATAATAAGATTTGCAATGCACTTTTTTGACATTGATTTTT
ACATATATATAGATAACCTTAAAATATTGCAATCAGCCACTATGGCTAAAACGCAAAACA
CACCAGATGACATCACGATTAAGTAGGAAAATATGAAATTTACTTTCTTCTCTGGTTGAT
AACACTTCTGTCCAACGAACGCGACTAGCGAGTGATGTAATGCTCGTTTTCGTTTAGAAG
ACGCAATTTTCATTTTTCATATTTAGTTGCTATTTTTAATAATTTTTATAAAGTTTACTA
TCGAGATACCAATTAGCACTATTTAAGCACAAATCTGAATAAGAATCAATGATAAAATAA
CATACATATTATTATTTGGACTAACTAGTATTGTCCCAGTGTCTTGGAATAATTATATAC
CTGAGGTCCAAAAATTCGGCAAATATGAGAAAATCTTATAACTCCTCCAATTGATTCATG
CATTTTCATCACAACAAACTCGCATTCATTTGGAAATGATAGATATGCAACAAAAATAAT
ACTTCCGTCTAATCCTACTGTTTTCTGCAGCATGTGCCCATGAGGTGGTGGTTTCGGTCT
CACAGTAGTCTGAGACAGTGGGGCTGATACTGATATAGGTGCACTGCCTTCATCAAGAGC
CCACGCTCTCAAACATGTATCTCCACATACAGCAACAGTTACACATTTCGTGATGACCAC
TCCATATGTTTCAATACCATCACTACTCTTGCCCCTCAAAGCTCCTGTGATACCAGATAA
GAAGCTGGGCACAGTTGATTCACGTTTTAATACCGTAGTGACAGCTGTTCCTGTCACTGG
TAGTTTAACTAACAACAAACTGCCTTCACCCTCATGTCCAAAAGCAAGGGCAAATACGGC
TTCACCATTCTCCCGTAAAAGTGAGGCACATGTGTGGGCAACACCAGTAGTTGCATTGGA
GTATTGATTCAATATGAAGTAATTATTAGGATTGTTTATAGATGTTGTGTCATGAAATAT
AGAAGGTGATGTGCTGCTCAATGAACCATATGTAGACTTTCTATCCAATATGGAGGGATG
AGGAAATACCATTCTATGAACTGATGAGACTGTGGCAGCTAGTATCACAACACTGTTACT
GTTGCTCCCTTCATAAACAGTTATATTGCTCAGTGGTGGTGTTCCAGGAGCTACTTTACA
TCTCAAGTTAGCAGAGGAAAGATTTAAATCTAATGAAGCTTCTGATATTTCAATGGCATC
TGATGTAGTTTGCCAGTAAATAAATCTATTTCTGCAGCAAGCTTTCGTAGAATCTTTATA
CCAATAGCCCCCAGCTTTTAAGGGTAATTTGATATCTTGAAGAGTACTATGCGTACCACC
TGTGTTTAGTAATATTTCTTTCCATTTTTCAGGAACGCTAGTGTTTGGAGTTATTTCTTT
GAAAGTTACCGGCATCGCCTCAAGAAACTTCATATTGGGTTTTTAACTTGTTTTAATGTA
GCTCTTGGAATAAATGCAATATTTTCGTGTGATAATAATAAGCTAAACTAAACCTAAAAC
AACAAAATGTTTAAAACATCCCTAAGAATGACGAAAACAGCAGAAAATAGTGATTTTAAC
AAGTTTTT
(3668 bp)

- SilkBase 1999-2023 -