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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR16278c2_g1_i8
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_probable_DNA_mismatch_repair_protein_Msh6_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000710 P meiotic mismatch repair
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006301 P postreplication repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 P response to UV
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032138 F single base insertion or deletion binding
GO:0032301 C MutSalpha complex
GO:0043570 P maintenance of DNA repeat elements
GO:0045910 P negative regulation of DNA recombination
Transcript
Level		FPKM:0.32 TPM:0.32
ORF EntryO_TrvaFAMAMG18746_complete:A_TrvaFAMAMG_TR16278c2_g1_i8
Sequence
(Nucleotide)
GAAAAAGACTCAATAAAAATCAGTGAGTATAATTTCAGCTCTTGATTCATAATCTAACAA
CACTTATGTATAAGTATATGTATACATAACATGGCAACACTCAAATAGTCAATGTTGCCA
ACAACTCTCTCATCTTGCTGGCATCATTCTCCATTTTCAAAATGTCTCTAAAGGCGCGTA
CACACGTAGCTTCCTTCTCCAGTTTCTTCGATATTTCGTGTGCTCTGCGCGTTATCTGTT
TAGGTATTCCAGCGAGTCGAGCCGCGTTGAAGCCGTAAGACTTGGGACAGGCGCCCGGAC
TCAGTTTATATAAGAACGTTATTGTTTCTTCCGGGATTTCATCTTCGTTGTCGGGAGTAG
ACTCATCTGTTTCTACCATACATGCCATATGTCCTAGAACGAGCCCGGCATGCGTGGACA
GGTGCTGCACGAGCGAGTGGTAGTGCGTGGAGAACACGACGCGGCACGCGCGCCCGGCCA
GCTCCACGCACACGCCGTACGCTATGGCGGTCCCGTCGTATGTCGATGTACCGCGACCCA
ACTCATCCAACAGCACAAGCGAATGTACGGTGGCGTGTTTAACAATGGCGGCGGTTTCGT
TCATTTCGACTAAGAACGTGGATTGTCCCGCCAGGATGTCGTCTGAAGCTCCGAGCCGCG
TGAATATACGATCCACTAGACTGAGGCTACACTCTTGAGCTGGCACGTAGCTACCCAAAT
GTGCCAGAACAGTGAGCAATCCAACTTGTCTCATGAGAGTAGATTTACCTCCCATGTTAG
GTCCGGTCAGCAATAATAAACTTGCTCCATCAGTCCCCAAACTGGTGTCGTTTGGTATGA
AATCATTAATCATTGATATGCAGGGGTGACGACCTTCTACGATTTGGATGTAGGGCTTTC
TTTCTCCATCAAAAGTGACATCAGGCAGGCACACATCCCCGCTCTGTTGTCGCGCGAACT
CCGCTAAACTCAACAGTATATCGAGAGTGGCCATGCAGTGTATCGCCGCCTCCCACTGCG
CGTAGTGCGACGAGAACTTCTCGAATATTCTACGACTCAAGTCTTTTAGGACATTCGTTC
TTTGCTCTTCTGCTGCCATCATACGGGATAGGAATTCCTTAGTTTCTGTAGTAGAGAACC
TCTTGAATCCCTTCCTTGCTCCCTCGAGATGGTAGTCGGCGCCGGCTCGGGAACACGCGC
TCTGCGGGACTTCGATCTGATAACGCTTCTTGTCTGAACCCACGTATGACAGCCGACATT
TGAAATATTTTTCTTGTTCAGCAAGATATTCCTTTAGTTCAGTTTCGATCTCATGTATTA
ATTCTAGAGTAGTGTCGTATTCTTGATCTACGCCTTCGCCTGGCTTGATGCTGCCTTCCT
TCTCTGCCTCCTTTTGATTAAATGCTTCCTTAAAAAATTTCAAAGTTTCTCTATAATCTG
GATATTTTCCTTCAAACTGTGTGACCTTTTTCAACAACACTGAGTCTACGTCACAGAAAT
GATCAACAAGTTTCAAAGCGGCAGTGAAACCGTTCAACACAGATATAAAATCCAGTACTT
TTCTTTTGGAATATGTTTTCTCTTCGTAAAATATTGCTCTGGAGTCTGGATGCTGTTTTG
ATCTTTTTAAGTTTCCGAGAGTGTGTACTTTAGCCAACAACCGTTCTAAATCAGGTAAAG
TAGTTAAAACATTCTTGGCGTCCTGACATAACTCCTGATTTTCAAATAATGTTTTCACAG
CCTCTTGTCTTTCTTTTATGACATTTAGGTTTGCACTTGGAGAACATACCCAATTATAGA
GTAATCTTTTCCCCATAGCCGTCGAACAAAAGTTCAATCGATCATACAAACATCCTTCAT
CCTGGACTATCCTCAAATTCCTCAGAGTTATAGCATCTAAGACCATAGTGTTACCGCCTT
CCCAACTGTTATCAACCTTATTCTCTTCAGATAAAGTCCTATTTAGAACGTCAGGGGGAG
CGTATGACGTGAACTGAGACATTCCTAGTATTTGAATGTCTAATAGACAGTCTGTTAGGT
ATGAAACACATCCGCCAAGCGCTTTGATAGCCAGATAACTGTTTGGAGCTGGCGTAAGAC
CGAGAGCATCACCTTCATGTAAGGACTCTTTAATGCCCTCCGGCCAATCTCCGTCTGCGT
TAGTTTTATAGTATTTTTCAGCTAATATTTTAAGCGTTTTATCAGGCGCCCAAATGTTGG
TGGGTTCTCTTCGCGCGCCGTGACAATGCATTGATAACAATTTACTGGTGCGAGCTGTCG
TTGTTTTGGGGTCGTATATTATCTATGGAAATAATGTTATGTTAATGTTCTTACATTTAT
TTTTCGTTGCCCGACAAAGGACGAGGTGTATGCGTCTTTGACTGTCTTTTTGTGCTTTCG
TTGCTCAGAAACGGATGAACCGATTTTGAGGCTATGTTAAAATCAGATATTCTAAACATT
TTTTCGAATGTCGATTTTAATAGACATTTGATTTTGACCCCTCTCCTAGACAATGATGGC
TTTTTTTAAATTATAAGTTTATTTATGTGTTGCCTGTAGACGAATGTACATGTCCCTAAA
AGAAACAACAGGGTTTTTTTTACATATTGTAAGATTGTGT
(2620 bp)

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