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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR16278c2_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_probable_DNA_mismatch_repair_protein_Msh6_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000710 P meiotic mismatch repair
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006301 P postreplication repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 P response to UV
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032138 F single base insertion or deletion binding
GO:0032301 C MutSalpha complex
GO:0043570 P maintenance of DNA repeat elements
GO:0045910 P negative regulation of DNA recombination
Transcript
Level		FPKM:1.27 TPM:1.25
ORF EntryO_TrvaFAMAMG18741_complete:A_TrvaFAMAMG_TR16278c2_g1_i2
Sequence
(Nucleotide)
CTTCGTTCCATCCGGGTGTCCCTTGACACCTCTCAAGTATTTTTTACTAATTCTCTGGTG
GCTTTATTTCTTAATCTTACTACTAATAATTTCTGCCTATTTCTCACCTTTCTTTCTCCA
TCAAAAGTGACATCAGGCAGGCACACATCCCCGCTCTGTTGTCGCGCGAACTCCGCTAAA
CTCAACAGTATATCGAGAGTGGCCATGCAGTGTATCGCCGCCTCCCACTGCGCGTAGTGC
GACGAGAACTTCTCGAATATTCTACGACTCAAGTCTTTTAGGACATTCGTTCTTTGCTCT
TCTGCTGCCATCATACGGGATAGGAATTCCTTAGTTTCTGTAGTAGAGAACCTCTTGAAT
CCCTTCCTTGCTCCCTCGAGATGGTAGTCGGCGCCGGCTCGGGAACACGCGCTCTGCGGG
ACTTCGATCTGATAACGCTTCTTGTCTGAACCCACGTATGACAGCCGACATTTGAAATAT
TTTTCTTGTTCAGCAAGATATTCCTTTAGTTCAGTTTCGATCTCATGTATTAATTCTAGA
GTAGTGTCGTATTCTTGATCTACGCCTTCGCCTGGCTTGATGCTGCCTTCCTTCTCTGCC
TCCTTTTGATTAAATGCTTCCTTAAAAAATTTCAAAGTTTCTCTATAATCTGGATATTTT
CCTTCAAACTGTGTGACCTTTTTCAACAACACTGAGTCTACGTCACAGAAATGATCAACA
AGTTTCAAAGCGGCAGTGAAACCGTTCAACACAGATATAAAATCCAGTACTTTTCTTTTG
GAATATGTTTTCTCTTCGTAAAATATTGCTCTGGAGTCTGGATGCTGTTTTGATCTTTTT
AAGTTTCCGAGAGTGTGTACTTTAGCCAACAACCGTTCTAAATCAGGTAAAGTAGTTAAA
ACATTCTTGGCGTCCTGACATAACTCCTGATTTTCAAATAATGTTTTCACAGCCTCTTGT
CTTTCTTTTATGACATTTAGGTTTGCACTTGGAGAACATACCCAATTATAGAGTAATCTT
TTCCCCATAGCCGTCGAACAAAAGTTCAATCGATCATACAAACATCCTTCATCCTGGACT
ATCCTCAAATTCCTCAGAGTTATAGCATCTAAGACCATAGTGTTACCGCCTTCCCAACTG
TTATCAACCTTATTCTCTTCAGATAAAGTCCTATTTAGAACGTCAGGGGGAGCGTATGAC
GTGAACTGAGACATTCCTAGTATTTGAATGTCTAATAGACAGTCTGTTAGGTATGAAACA
CATCCGCCAAGCGCTTTGATAGCCAGATAACTGTTTGGAGCTGGCGTAAGACCGAGAGCA
TCACCTTCATGTAAGGACTCTTTAATGCCCTCCGGCCAATCTCCGTCTGCGTTAGTTTTA
TAGTATTTTTCAGCTAATATTTTAAGCGTTTTATCAGGCGCCCAAATGTTGGTGGGTTCT
CTTCGCGCGCCGTGACAATGCATTGATAACAATTTACTGGTGCGAGCTGTCGTTGTTTTG
GGGTCGTATATTATCTATGGAAATAATGTTATGTTAATGTTCTTACATTTATTTTTCGTT
GCCCGACAAAGGACGAGGTGTATGCGTCTTTGACTGTCTTTTTGTGCTTTCGTTGCTCAG
AAACGGATGAACCGATTTTGAGGCTATGTTAAAATCAGATATTCTAAACATTTTTTCGAA
TGTCGATTTTAATAGACATTTGATTTTGACCCCTCTCCTAGACAATGATGGCTTTTTTTA
AATTATAAGTTTATTTATGTGTTGCCTGTAGACGAATGTACATGTCCCTAAAAGAAACAA
CAGGGTTTTTTTTACATATTGTAAGATTGTGT
(1832 bp)

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