SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR16278c1_g1_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_probable_DNA_mismatch_repair_protein_Msh6_isoform_X2_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000228 C nuclear chromosome
GO:0000400 F four-way junction DNA binding
GO:0000710 P meiotic mismatch repair
GO:0003677 F DNA binding
GO:0003684 F damaged DNA binding
GO:0005524 F ATP binding
GO:0006281 P DNA repair
GO:0006298 P mismatch repair
GO:0006301 P postreplication repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0007131 P reciprocal meiotic recombination
GO:0008630 P intrinsic apoptotic signaling pathway in response to DNA damage
GO:0009411 P response to UV
GO:0030983 F mismatched DNA binding
GO:0032137 F guanine/thymine mispair binding
GO:0032138 F single base insertion or deletion binding
GO:0032301 C MutSalpha complex
GO:0043570 P maintenance of DNA repeat elements
GO:0045910 P negative regulation of DNA recombination
Transcript
Level		FPKM:1.22 TPM:1.19
ORF EntryO_TrvaFAMAMG18739_internal:A_TrvaFAMAMG_TR16278c1_g1_i3
Sequence
(Nucleotide)
GTTGTTTTGGGGTCGTATATTATCAAAGCAGGTGGATAATGCGCCAGCGTAGTGAGAAGT
CTTGATGAGTGTTTGTCGTCTTTGAACTGTCCGAGATGAAACAGTCCTATCGAAGTATCC
AAGAAGCAAACACCGTACGAACTGCAGTCGGTGTGTTCTTCTTCAGCCACGGCAATCATG
TAAGCAGCATCCGTATGAGCTGGCCCTGTGTCCTGTAGACCGCACACCTGCGCCCCTCTC
ACCGACACTTGACAGATTTCACGACGGACTACTTTATCAAATTTAGTATTTTGACCCGTT
TTCCTACATCTCTCCTGCATCATATCTGGTGTTTCCGTTTGTTCAACGCGAGCCACTTTG
TAGCCCTTAGAGACGAGAGTGGTCGCCATACGGCCGTATGCACTTTCAGGAAAACCAGAA
TGAGCAAATTCACCCTTCATATAAGAGAAACCAAGCTCATTAACCCCGACAGCAGCATCC
ATGTGATAGAGTTCATAAAATTTACCAACTTTGAAGAACAGAACGCAATCGTAATTCGTT
GCTTTCATCAGCCACCATTGATGATGAGCCGGTGTCTGAGTTTTCAAGAAATCCGGTGGC
ACATATAATGTGGTTGGATCATAATCCGGATGGTCTGGTCTCCTTTTCATTGCATCTCTA
ATTTTGTCTGGTTTCAACCAATCCAGCTTGCAATGTACCCAGTTACCATCTGATGTGTCT
TCATGAGTTTTAGGAATTTCTTCAGTAGTACTTTTTGGCATTGTACCAACAGTTTTAGCT
GACCCTTTGGTTTTCGGAGATTGATTTGGTTCATATTTGAAATTATCCTGAAGTTTTTTT
TCTACAATACTTTTCTTTTTAGTTTTTTCTTCATCTTCTTCTTTTTTGACTGTTTCAAGT
TTATTATCTTTATTTTCCACATCTGAATCATCAGAGTCAACCGGATTAAGCCTTATTCTC
TTTCTCTTCTTAGTGGCTATGATCACTTCTTCATCACTATCGCCTTTAACTTCGGGCGAC
GGCGTTATTTGCCGCTCACGCTTTTTAATCTCAGTTTTTTGTTCTTTTACACTAGTTTTC
GGCGAAACACTTTCAGTTTCTTCAAGAGAATTTGATTTCAACTTTTTGTTAGCAGGTGGA
GTCTTGGAAAAATAATTGAATAGTGTATTAGCTGCCCCGGTACTGTTTCGCTTGGACATT
TT
(1202 bp)

- SilkBase 1999-2023 -