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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR16274c0_g2_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_ribonuclease_3_[Bombyx_mori]
Ontology
GO:0001530 F lipopolysaccharide binding
GO:0003723 F RNA binding
GO:0003725 F double-stranded RNA binding
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004521 F endoribonuclease activity
GO:0004525 F ribonuclease III activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006396 P RNA processing
GO:0010468 P regulation of gene expression
GO:0010586 P miRNA metabolic process
GO:0010628 P positive regulation of gene expression
GO:0016075 P rRNA catabolic process
GO:0016787 F hydrolase activity
GO:0030422 P production of siRNA involved in RNA interference
GO:0031053 P primary miRNA processing
GO:0031054 P pre-miRNA processing
GO:0042254 P ribosome biogenesis
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0050829 P defense response to Gram-negative bacterium
GO:0050830 P defense response to Gram-positive bacterium
GO:0070877 C microprocessor complex
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
GO:2000628 P regulation of miRNA metabolic process
Transcript
Level		FPKM:3.48 TPM:3.40
ORF EntryO_TrvaFAMAMG18718_5prime_partial:A_TrvaFAMAMG_TR16274c0_g2_i2
Sequence
(Nucleotide)
TCATCAAAATAAAAGTACTCAAGAAAAATTAGCTTGATAGTAATCAATTACAAAAATAGA
CCAGGGAACCTGGACCATCAATTTTGACTAGCATCTGGTCTTAAAGTTATCCTATGAATA
TTATTGTGTGGACACCAAATTAAGTAAAAAAAAACGTCAATAGTTTTCCTTATTCGATAT
TTGTTTTCTAAATATACTTAGTTTTTTTAAAAAATAACACTAATTCTAGACAGCCAACTT
TATACCGCGGCTTCGCCTACGGAAAATCTTTACAAAAACCACTAATCAGACTTAAAACCA
CCACTAAACAATAGAAAATCTACCAAAAAGCCATTAAAAAACAAATATTCAAAATTTCAT
TCTAATTCATTTAACTTTTCGTGACGAATACAAATTTATTACTTCATCGCTTAACCTAAG
ATATCAACAAATACGTCATTTTACATTAAGCATACTTACACAATATTAACGCCTTTGCAC
TTATTCTTAAAACAAATTGATTTTTATAACAGACCTAAGGGTCCGAATTCATATTTTACG
AATTTAATCTGGATTTTAAAAAATTCAAGACATTTCAAAAAAAACGACTGAATTAATAAA
TAAATTCATCGCTTACTCTTCATCAGAATCAGATCGTCGACATTTTTCTTTTAACTTCTC
ATACTCATTGTTCTTGATGAGTTCTTGTTTTATTTTTTCCATGTCACTAAGTAGACTGCT
GACTTCCACGTTTTCGAGTTTCTCAGGTATTTCTGTTTCAGTGTCACTGTCCAATCCGCT
GTCCTCATTTGCTTTAGAGGGAATATCTTCGTGTTCTGATTCGCTGTGAGCGCTACTTTC
GTCGGAAGAGTCCGGTTTGATTGGCACGTCGAGTCTGTACGCTTTGGGTACGTTTTCGTC
CCGCATGGCGAGTGCGTGCGCTCGGGGATCGCGCGCGCCCTTCCTTTTGCGCACGCTTTT
AGCTATGATACGCTTCTGGTGGTCTAGTTGAGGGAATAATCCGTGTGCAGTGTTGAGCGC
CTCCTCGGCCGCGTTCATCTCGGCCTCCTGTATGGAGTGTCCGCGCGCGGCGGCGAGCCT
CTTGCCGCGGAAGTACACGCCCACCGTGTACACGCGCGTATTCGTAGGACCGAGGCACTC
GATCACTTTGTAAACCGGTATATCAGGTTCTCCACCCTCCATGGAGCGCAGCGTGAGACA
ACATTGTTGCAGTTTAGACTTGGGGTCGTTCCAATCCTGGTTCATGATGAACTGCTGCAG
TCGCGGGAACAGACACGCGTTACAGAACGCCTGACAGTACTCCAGATTCTTGTCAATAAA
TAGGGCGCCTAAGAATGCTTCAAGTAAATCAGCCTTATGTTTCTTTATGGTGGGTTTAGC
TTTAGGATTATTGTAAATAGCGTAGGCAGACATGTTCAGATCGTCGCAAACCATAGACTG
GGTTCTGTTGTTGACTAGAGATGACCTTAGTAGAGATAAATGTCCTTCATGGTGATCAGG
GAAGTGTCTATACAATCTATCCGACACAACCAACTGTAGAACAGTGTCGCCCAGAAATTC
CAATCTCTGGTTCGAGCCGAGAGTCAGATGTGTGAATCCTACTGAACGATCCGTGAACGC
GCGGGCTAATAACCTGATGTGTTTGAATTGTACTCCTATCGACTCTTCAAATTCGGTGAG
CTTCTGCAAAAATTCGAAATCTTTAATGTATTTCCTGTCGCCCTGCGGTTCTTGCTCTTG
TAAGGGATGTGCTCGCTCCTTCGTCCATACTCCTAATAACTCTGGTTCATTGTGCCACAA
TGCTAAAGCAAAAACTCGGTCAGCTACCTCAAGTCCAGCGTCTAAGAACAGAGCTCCCAT
GAGAGCTTCGAAGCAGTTCGCCATCGCGTGACGCATCACGACGTCGCGACACAGATCCGA
GCCGTGAGCGTATAACATGAACTGTTCCAAGGTTATATTCTTAGCAAGTTGCGCTAAATG
TTGATTCTGTACAATAGCAGCTCTGTATGTGGCCAAACCTCCTTCTGCCAACCCGGGGAA
CATTTTAAACAGATGTATCGACGATAGAAATTCAACAACCGCATCGCCTAAGAACTCTAA
CCGTTCGTTGTGTTTGATTTCAGATTCTGTTTCGCTCATTTTACCGAAACTGGACATTAT
TTTGATTAGAGTTACTATGCCCTTCTTCCTAGTATAATGTATCCTCCTGTCTCCGTACTC
CGGCTGCCGTATCCCGCAGTTGGTGAGGCTGTTCCTGGCGTGGTCGGGGTTGGTGCCGAA
GTTCTCTCTGTACGAGGGATGGGTTAATGCAGTCTGAAGCAACGCTCGCTGCTTGAACAC
GTAGTTGATTTTCTCTTCTAGCTTATCCAACGATTTGTGGAATCGAAGATGACGTACTAA
TACTGGTATTAACATGGCGTGCTGTACAATGTCACACATAAGTCCGGTCGTGTGAAATCC
TTCAGACGATATGGCCACAGTAACGTCCCTCTTCATTTTTGACTGAGTACGCATTTCTTG
CAGTTTTGCTTCTTTTGCGGCCAGTTTCTGTCGCTCTTTGTATGAAGTTTTCGACATGTT
CGCTATTAAATGTCGGTATTTAACGTAGTAGCGCCAAGCTTTTTGATACTCAGGGTTGCC
AGCGTAACTGAGTTGCGGTGGTCGTATACCAAAGTGTACGATTTCAGGATAATATTCTTC
TATTGGTTGCGACTCCTCCCCCTCTGGTGGTGTCGGTGGACTTCGATCTAACTGATCCAC
ACGGACTGAGCAAGGCTTCTTGCCAGGATATGTTACTATCATTCCTTTTATTCTATCAAC
AAACTTTTGCCATGTGTAATGATCCATTGCGTGAACATCTTTCAGCTTATCCGGCGGTAT
CAGCAAACCACTTTCGTCAATCAAATACTTTAATACTTCACACATTGAGAGAACCTCACA
GTTCCATTTCATGCCTCGTTTTGTGAGATATTTGCC
(2976 bp)

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