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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR16204c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		acinus_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006397 P mRNA processing
GO:0006915 P apoptotic process
GO:0006921 P cellular component disassembly involved in execution phase of apoptosis
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0016887 F ATP hydrolysis activity
GO:0019899 F enzyme binding
GO:0030218 P erythrocyte differentiation
GO:0030263 P apoptotic chromosome condensation
GO:0035145 C exon-exon junction complex
GO:0043065 P positive regulation of apoptotic process
GO:0044822 F RNA binding
GO:0045657 P positive regulation of monocyte differentiation
GO:0048025 P negative regulation of mRNA splicing, via spliceosome
GO:0061574 C ASAP complex
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
Transcript
Level		FPKM:18.94 TPM:18.55
ORF EntryO_TrvaFAMAMG18399_complete:A_TrvaFAMAMG_TR16204c0_g1_i2
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTTTTTATTTTTCAAGTATTTATTCAACATAAAAGAATGTAATAAT
AGTATTTTGACAAAAAAGAAAACCATCTTGTTGTTGAAAAAAATTGAGGTATGATTCAAA
TAACACATTTCTCTTTTCTATAAGAAACAGATAAGAAACATTCACCGATATGATGTTTCA
AATAATCCATCTTTGTCAGGATTACCATCTGTAGGGTGCAATTCAACATTACTTGTAGAC
TGTAGTCAATCACGATGGAAGGTATCTCCTGTTTTCTATTCTAGTAATTTTCTGGGATTA
TACTTTTCTCCATATCTAATTCACAACATGTTTATTGTCTTCATAGTTATCAATACAGCT
CCATTATTTGTCAGTATTTTCTGGTTATAAATTTGACTGGTCATAAAAATTCCAGCAAGT
CAATCAAGTGAGAAGTTTTAGAGACGTGAGTTCACGTCAACCAGTGTCGCCGATATCTCG
TTGCAAAACTCATCAAATCAGCATCGGACACAGCACATCATTCTCAGAGCCTCCACCTCC
CCTCGGCTCGCATCGTGTCAGAGTGACCGCGGTACTCCGAAGAATTAAATCATAGCTTTC
TTCCAAGCTTGCCTTTCTATAACATTGTGTATAAAATAAATTCAAATAAAAATTGATTTC
TTTCACAATTTTTATCCCTGATATTGCCCTGTCCAGTTGAACCTAATTCATATACTATAT
TTTATTAGTCAACACACAATTATTTTCTAATCAAAAAAGACTTCTTAATATACAATTTTA
CCTGAAAGAAAATGTCGAAATCGACAATTATATTAGATTAGTTACATTTGTGGAGTGTCG
TTGTATTTTTGTAGTATGAACTGTAGTGAATATTATGCATGGTAAGTAGTGTTAGTGTAA
TGTGGTACGAATGTATGCAGGACGGACCATGCTAGTGTCGTCTGTGAGGCGCCGGCCGAC
GTTGCTCTTGCAAACGACGTTCATACTCGGCCATGTGTTGGCGACGTTGTTCTTCTTTTA
TTGCAATCGTTTCTGCTGAGAGTGGCAACCAGTAAATGCATGGAGTTGTTTTTGTCTTTC
TAAATAGATCATCCAATAATTTTGCTGGGGCCTCCTCTTCTTTCTTTTTGAACTTGCGGG
CTGGTTCTGGACTTCTCTCAGGAGTTCGATGACGTCTCTTCTCGGGTGGCCGCTCTTCTC
TACGTAATTTGTCTCTCTCTTTTTCTTTCTCATTTTTACCAACATCCCACTCCCTTGTTG
CGCCTTTACGTTCCCATGGTTTTTCCGCTTCTGTTTCCCTCTTCAAATCTTGTTCTCGAA
GCCAATCTTCTACAGTTCCTGGAATAGCTGAAGGAGGAGCACTCTCTGCCTCTTCACTTG
AACATGCTTTATCAAATGCTTCTTGACTTGAAAAATCAACATTCAGTGTTTTAGGATTAG
ACACTGGCCATGTAACTCCATGTAAAGCATGCCTTGTTTCCACAGCTTGATCTTCAGTTT
CATATTTCACATAGCATTTAGATTTGATCTTATCTATCCAAAAGCCATTTTCTTCTATTC
TGCCAGTTCTTTGTAGTAAGTTCTTCAGTTGCAATAAAGTGAATGGCCTAACCAAATTAG
TTATGTAAAGTATGTTAGATTGTTTATGCCTCGGTGGACTTGGTGGTCTGGCAATGATAC
TATCATTTTCTTTGACAATGGATATTTTTCTGTTCAAATTTAAATCCTTCTTTACATTTT
CTTTATCTTTTTCATGTTCTTTTTTATTTTCCTCTTTTTTATTTAGTTCAACATTTTCTG
AATTATCAATGATAATTTTGGGTAAGATTGGTCTTTCAACTTTCTCTTTAACTTCTATCC
TTTTATGTTTCTTTTCTTCAATAACTTCATCAAATTCAACTGGTTTGACATTTGGTATAA
TATCTTTTAATACTTCAGTTGATATAGTGATTGACTTTTGTGTAGTGAGTTTTGGTCTTG
ATCCCCATTTACGTTTCCTGTTCACAACAATGGGAACTATTTGACCATTGGGTACTTCAT
CTTGTGATGGTGGTGTTCCACCTGCATTTTCAGGTTCCTTTTTGTGACTTCCTTCATCTA
ATGAATTTTTCCTAGAGGATGTCTTGCTCAACTCTTTATTATGTCCAAAATCTGTTGACA
TTTTTCGGCTTTTCTCTCAGCTTTATGATCCACACTTTTCTCTGATTCCTCACCATCCTT
TAATTTACTTGTTTCCATTTCTGATATTTCCATTTTAGAGTCCTCTGGATGTAATTCTAA
GACTTCAGATTTGTCTAATGATTCACTGCTATCTCTGCTAGTAGATGTGTGATGATTTGA
CTCACACTCCTTGCTTTCATTTTGGGATGTTTCTTTGGCATCATTATCAGATTTATCATT
TTCTGGTGCCACTACAGTATCCTCCTTTACTGTTTCAACTGATGCATTGTCTTTACTAGC
AGCAACAGAGTCACTACTTGGTTTGTCATCATTTGTTTTCATATCTGTAGCTCCCTCCGA
TACAGACTCAACTTTTGTTTCATCCTTATTCTCAATAGTATCATTTTTCAGAGCAGATGT
TGAATCAACATTTGAAGAAATATTGGTTTCAAGTTTAGGGGATGCAACAGTTGTGTCTGC
TACAGGATTTTCTGGCACTGATGTATTGTTGTCTACGGTTTTGGAATCTTTGTTACTTGA
AGAATTTTGAGTAGTTTCTTCATGTGTTTTATTATCATCATTGGTTGAAGATACTGGTGT
CTCCGCTTTAGATTCTGTCTCACTTTGAGATACCACTTCATGATCACTTTTATCTTTATC
ATCGTTTTCAGCATCATCTTCCTGACTATCTTGATTTTTGTCACTATCTTTATCCCGGGA
CTTTTTAGAACGATGTTTGTTTTTTTTCTTATCCTCAGGTGTATCACTGGGATTATCACT
AGAACTAGTAGCTCGCGAATGCTTTCTTTTATGGCGCGGAGACCTCTCAGCTCGTTCTGG
TGTAGACGGAGGACGCGTTAAGCAAATCTTGAGTTTTTGTATTTCTCCACCGTCACCTGA
AGTTTCAGCAGTTTTAACTTGCCACACTTGATCTTGAGACTCTTCAGGAGTTAACTCTTT
GGCGGGAGTTTGTGGAGGTTTGGGTTCAGGTTCTACGACAGACTGGTTTACAGGTGCAGC
ACTTGCTTCATCCGGCGATTCATTTTCGGAAGAAGAAGATTGTTTCCTACGCCGACCTCG
AGTTTTTTTAACTTTCTCGACTTTTTTCTCAGGAGATACTTTTGCCTTCTTGCTGGCGGT
ACGCTCACTTTTTCGACGCATTGTTGTTTCTTCGTATTAAAATCACTTAAAATAACAACG
TGAACAAATTACAAACAATGAGCACACGGCAATTTACAATTTGGCAGACAACGCAGACAA
GCATCCATCTTGAAAAAAAAAA
(3442 bp)

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