SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR15973c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing-splicing_factor_8_[Bombyx_mori]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000386 F second spliceosomal transesterification activity
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030529 C ribonucleoprotein complex
GO:0030532 C small nuclear ribonucleoprotein complex
GO:0030619 F U1 snRNA binding
GO:0030620 F U2 snRNA binding
GO:0030623 F U5 snRNA binding
GO:0044822 F RNA binding
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0071013 C catalytic step 2 spliceosome
GO:0071222 P cellular response to lipopolysaccharide
GO:0071356 P cellular response to tumor necrosis factor
GO:0097157 F pre-mRNA intronic binding
Transcript
Level		FPKM:31.86 TPM:31.21
ORF EntryO_TrvaFAMAMG18320_complete:A_TrvaFAMAMG_TR15973c0_g1_i1
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTTTTTTTTTCATAATAAATGAGTTTATTGACTTATACAATACATA
CAAATGAAAATATTCTTATCTACTAGACACCCATACAAAACCACAGACAAAATATCAAAC
AATAGCTTCGATTATTTGACTAGTTTTATGCAAACAAGTCTTCTCTGTCGGCGGCTATTG
TCGGTGCGGCGGCGTCCTCCATGGCAGCGAAGTTCATGAAATGCGCCGGCCTGTGCACTT
CGTGGTAGAACTCGCGCGGATTGCCCAATTGCACACCGTATTTCATGTTCGGATCGTGAC
GTACGCCCATAAAGTTGTAATTCCAACTGCCTTGCGATGGCACCATGAAATATCCCAAGA
ATCGATCCGACAGTAACATCTGCACTCTTTCATAGTGACTGGGCAAGTAGCCTTTAGGAT
TGTTACCACGGTCAGTATTCCTGACTCCCCATTCGTAACCGCTCGGTGTAAGTTTGTATG
CAGTTAGTGAACAAGATCCAGGTGTGAAAGAACAAGTGATGATTATCGTCTTCTCGCCGT
CCCATGAGGAATTGTCTGACATGATTTTAGCGTGAGATGTGATATCCTGTGGCGACAACT
GCGGCAACTCGTTCGGCTGGGTGTGCATCCACCCGAGAGGTTGTAGGTGCGCGAGAGCTG
GATGTTTTGGAAGATGTTTCGGCAGGTGCACTTGTTGATGTGTGCCCCACTGCGGAGGCA
ACACCGCGCAATGAACCTCGCGAACCATCGGGTTGTCGCTCGGAGATGTACCATATAAAT
AACACGCAATCTGTGCTCTTAAATCGGATATAGTGACGAATTTCTTGAGCAAATTCTTTG
GTAGAATATAGGTGTATCCACTCTCCTTGATGTCGTCAGAACTAACGTAGATGTGGTTTG
TACGAAGATGTAGGTTCGTCGCTGATATTGCACGTACACGCCATTCCGTCTTAGAACTGA
AAGTCTGTGACTCGTAATTACTGGTGGTAGATGTAATGATCTCGTCGCCATGTTTGTTGA
CGGTTCGTGTAGTAGTGGCCGTCAATTGACTCTGCTCCTTGCTCTGCTTCTCAATCTCTG
CGATCTGTTGTCGTTGGGCTGACGGCGCCGATATCTCCATACCGAGAATGATATCACGGA
TCTCGGATTGTGTGAGTGACGCTACGTTTACATTATTCTTCTTTCCATAATCAGCTAATA
TAAGATCCTTGAGTTGTACTTCGACTTTGATCCAGTCATCGTCACTCAAAGTAGGCCAGA
TGTGATGAGGCTCCGTGAATGTTGTCTTGTCCGGTTTCAGAAGTACTTTAGTGCGTTCAG
TATTGACGTGCAACGCTCGAAGTATCAGGATAAGACGACTGAATGCAGTGTATGACGATA
TAGTCTTCAACCAATCATCATATAAATTGAAGAGAACCATCTGAGGTTCTGTTGCCTTCA
GAATGAGATCTCCAAACTTCTCGACTTTCAGGCAAGCTTGGAACGGCAACTGCAGCTCTG
AACCTTTGATGACAATGTTCGGGAAATCTAGCAAGTGGACCTCAAGAGGGTCCAACATTC
CTTTTCTAGTGACAATAATTTGTTTAGGTTGTTCTTCAACGGGCAATGATCGAATCAGAG
CAGCCACTTCTTCAGCTGTCTTCCATTTGGCGAGCTGTCCAAGACGTTTCTGTCCGGCCC
ATACACTGGTATGAATGATCTTGAGGAACAGTTGTCCAGTACGAGGATTGAATATAAAGA
TAGCACCGTTTATTGGTTTGGTTGTTAAGTTTCCTTCAAACGTCTTGTGAATGGTCACAC
GATATACATTGGTGTCGTCGACGAACCAAATAATTTGATTAGAGAACAACTCTCCATAGT
TCTGACTGGAAAGGTAAGGTTCCGTCGGTTCTGACGAGTACAGTTGTAAAGCCTTACGTA
TGCGTTCTCGAAGCACGTACAAAGCGGGGTTGGCCTTCATTATCTTGGCCATCGCTTGTT
GGATCAAAGGTTTGCAGCCAGGGAACCAATTACCGTACGCACTGTGCAAATTGTAAGCTA
AATCAATAGCAATCAACAGCCCAGTCGGGGATGGATATATCGACATGTTATCTGTGGTGT
AATCCAGAAACTTGGCTCGGGCGTATCTCTCGATATCGTGGGAATCGTAATCGCCCCAAC
GCAGCTGAATATCGAGCCAGTACTTTTGAGTCGTCGTGTTGTCCATTGTGTCTTTTGTAT
CAGCCAATAAGGATGGTCGCGACACGTTCCACTTGTATGCCGAGAACAGCAATATGTCGG
CACACGATGAGTTCATTTTGTAAGATTTACGCGGGTGAATAGTTTCTTTTTGTACTGTCT
CGATTTCTAAAGCGTCCAGTTCTTGATCAAATACCTGACAAAGGTCCATGACGATAGACT
CGTGAACCTTTTGCCACAAGTGAGCTCTGAAGATTTGAATGAGTGAAATCTTCAATGTTG
GAATCTTACCGTGCATGAATATGCCCGTAAGATCGAGTTGTACCTGGAAACCGACGTAAA
CATTGGCTCTGTTGATAGTAGGCGACCACCATAAAGTGAAACGACGGTTCGGAATTTGGT
TCAAACCAGAACGTTGGGCGTTCGTCAACTTTTTATACTTCATTGATTCTTCGAAACCAG
ACGCCTTCTCCCAGAACAATCCCTCCCAGGTCGGGAAGTAAGTTCCCTTGAACAGTGTAT
GTTCTAGGATTCCTTCAACCCCTCCCAAAGCCTGTATCATGTCTGTCCTGTAGTTGTTCA
AGTTCCACAGTTTGCCGTCGTGGCGCTGGTGTGTCCACCAGAATGGATTCTGTTTTAGGA
CCTGATACTGTTTGAATTCGGTACGTATACGCCATCCTTTGTCGTAAGCGAGAGTGTGTC
TGTCCTTTTGGAAAAGCGTGTTGATACGCGGGATACCTCTATCCCAAGAATCTTCCAAAT
CTTCTAAAGTCAATCGCCTATTCTGGGCATTAGCTTCTTGTCTCTTTAATGCATATTCTG
CCCACACTCTCTGAGAATCGACGAATTCAGCTTCCCATGGTTGGATGTATCGATACAAAT
TCGGAATAAGCTGGTCTTCGTCGTGAGACATTCCCGAACGGAAATGAGTGATACCGACAT
CAGTTTGTTTCGACCAACGTAAATCAGACTGAGGAATGAGCACATGTCCCATAGACAACA
TTCCAAGACCACCAAGCTCTTTGGGCGTGTAGAACACGACCGGCGGGAATCTTGAAGGCA
TTTTAGAGTTCAGCCCGATCTTGATACGAGTTTGAATTTTGTTTTCGCATTTAACCAGTA
AATCGAGAAGTTCTTGTGTATTGACCACAGCCTCACGGAAGTATGTCATTAAACCAATGA
GAGCAGTGTTCCACTTGTTGACGATTTTAGTGAAGGTAGTTGATCCAGAGGCCATCAGTA
TTTGTCGCACCCGATTGTGGAAGCGAGCTAACGATTCATCGTCGACGCGGAGGTAACATT
GCGCCGTGCGTTCTTTAGTCACTTCGTTCTGAAGGTTCCATACTCCGTCGCGATGAGATA
ACTCTTCATGTTGGCTTCGACACTTAGGCAATATTCTGCATTCAAATCCAGCCATATTAA
ACAATAGATTGGGATTGTCCTTTGAATAAACAGATACGAAACTGTTCTCCCATTGTATTG
TTGTCACAGAACGTGGGAGACGATTCTTTATGTCCCAAAATACTGCGCGACCAAGATTAA
CATCATGCTTCATAAGTCTCATTCTTGCATCCCGAGGCCAGCACTTCTTGTTGTTATAAC
CAACAATATTCTCATTGTTAGGATCTGGATGTTCAGTTAAATAACGCTGAATCAAATCTC
TGGCTTCCTCCGCCGAGAATCTGAAGAAGATATGAATCCTGTCAATGTATCTGCAGTACA
ATCTAATAGGATGAGCTGTTTCCGTCTGTCTGTCTTGATACGAGAGGAAATCGTTCGGTA
GTTGCGGTGGTCCCGCCATTTCACTGGCTCTTTGCAAACCGAGAACCAACAAATCAAGCA
CTAAGCCATAGTACTGAACTATGAACGAAGCAAACTGCAGCCCTCGAATTATACCGTAGG
AGTTTGTATGGTTCATGTCCTTATAATTAATTACGACGTTATTTTTCGCAGTCATGTAAT
CGGCAATGTTGTGATCGACAATCAAACGCAACAATCTGTTAAGGAGCGTTAAATCTATCT
TTTCGTATAGTTTCTCGAAACGAGACTCCAATAAAACATTACATTCACCTTCGCCCACTT
CCCATACATCTTGTAAATTGTTGATTCCTTGACACCACTTGTAGACCAACAATGGTGAGG
GTTCCGTATCGGCCGGTTTGACCCACGGCGGCAGAAGACGCCTCTTATCGGCCTCGTACC
ATAGATATTGATCTAGATACGCGTCAGTTATCTTTTCTAGCGGTTCCACGTCGTACACCG
GCACTAAATGCGAGTAGAGATCCATAAACTCTATGCCCACCTCTCTAAAAGTCCTTTGAG
TTAACAAATGACGTTTGATTCTGGATAAAGCTTCGTGAGGATTGTCGTAAGCCTGTTCAA
TGAGTCCCAATTCCTCCCTCTGACTCTGATTTAACCTAGATTTGACACTGTATGCTTCTT
TCAATCTTTCGAGAGCCAAGATCAACAGTTTCGTGTCGTGTTTGTATGAGAGCGGCGGGA
AGGGGATTGGCGCGAAACGACGCGATTCAAGCCAATGCACTGTTGTAGTGTAGATGGCTA
CGGCTTCTTCTGGAGAAATGTAGGGACCGTCCTTAAGATAATTATGTTGTCTCTCCTGTT
CCGCTTTCAAGTACAACCGCGTCAGTCTACCGAGATTTTTCTTGCAGACTGTTTTGTCGA
CGGTAGCACCACGTCGTATACGTTCTCTGTTGTAATGGGCCGTGTTCGTCCACCAATCCG
CCTTCATCTTTACGTATCGGAGAATCATGTTCTCTATTGGGGTCGGAAGACCGGGTACTT
TCCATGGAATGTTTGCCTTCCAGCACCTCCAAGCTTCAGACAAATGCTGCAATATAGTTC
TTGCTTTATTCTGCTTGATACCCTCCGGCATCATGTCGACGATGTCATGCATCACTGAAG
CACGCAGCTCGAGGTCGAAGTGAGATTCGACACGCTGCTTGGTTACCGTCTTGGCTACAC
CTTTAGAATGTCTTCCCTCGAACTGCCTGGACAGTAAGTTTCCGAGCCAACGTTCCAGTA
GCGGGGTGATACCTCGCATGAAGAACAACCAAACTCGCCAACCAGGCGCCCAGAAACCAC
AACCAGGACCTTTCGATACTGGACCAGTATTGAACCGGTAGTAAATCAAATGCTTCAAAT
CCTTGCACATTCTGATCTGCCTCATCAGTTTGTACTTGTAACGGTACATTCCAGTTAGTT
GTCCGACGTGTGCAAATATGTACTGGAGTCCATCAGCCAGTTGGAATGAGTCCACGTTGT
TGAGACGATATTGCACGTGCGAATCGACTATCAGCTTTGTTAGACGAAGTATTTCACGAC
ACAAGTGGAAGGCATTTCCAAATCGTGACTTCTTTCTTTCCTTCGTGGTGAGCGTTTTTA
CTGGTTTCAAGTTGAAATTGTAGTCCAAATGGAGGTAGTTCAAGTTCTTACGATGAATAA
GAAGGTTGAGCATATTGTAGCCTTGACGGCACACTTGAAGACCAGCTTCGACCCAATCCA
AGGTGGTTGTTTGGAAGAACTTTGTTGATTTGAATGAGCGGAATAGATACCTTTTCTTCT
GTGGCTTAGGTGGCCTGTGTTTCAAAGAATTCAGAACATAATACTTGAGCAGTTTCTGGT
ACGAAACGCGGACTTTCACGGGTTGTCCTGGAGGGCAATGTTCTTTGTACCAAGTTTTTA
CTAGAGGAACATCTATGGCACGACGTGTACGTCCTGATCTCATGCTGAAAGGTCTTGGCG
CCCACAATAGAGCGATGCCGTTCGCAGTATTATCAGTGTAAAGTGCGGTTTCCTGTAAAA
ATGGCGCTACTTCATCAGGCAATGCAAAATCGTCCTCCTCCGGGACTGGTTCAAGAGACT
TCACTGAGTGGCGATGAGAAATTGGGTTGATGAGGGGGTCGAAGTAAAACGCGGGCAGAT
CGGGATCTTCAGTTTTGATGTAAACTACATTTGGTGTGTGATACCAAGACAACTGGACGA
AATGCGGTAGATTATTGTACAGATAGGGAAAGGCGATCCTATACTCCGTTCTTATAGGCT
GACGAATGATGATCTTATTGATATCATTAAACTCATTCCAGTCCTCATCACCTGCCGAAT
TATCCTTCACAAGTGGTTCGAACTTCGGTCCACCAGGAATGGCCATGTTCAAAGCTTTAG
CGGTGAAGAAACTCTTAGAGTCAAAGAGATAAAAGTAGTTGTCATCTACCAAATCGGTTA
ATAGCTGATTCGCTAAACGGTACAGTGTCGCCATTTGCGGAAGTGTCAAGAACCAGCGAC
GGTATGTCGATCCATTCACATGTTTGGTGTCAATCAGTGGTTTGTGATCGTAGAACCAAG
ACGCCACTGCTCTATCTTCTTCAGGATCTAGCTCAATCTGAATAGGCTCTAATGGTTCGA
CATCTAATACGTTATCAGCGTAATCGAGGGGAGGTTCTTCATCATCAAAAGGCGGGAACC
TCATACGTTTGAAATGCCTACGATCGCGTTTCTCACGTCGCATCATGATCCACATAGTGC
CCCACTGCGCTATGTAAACCGGTTCAATAACCCAAGGTATTTCGTTGACGAATGTTATAG
CTCCAGTGATATGGTAGAGGACCTTGACATCTCTTATCTGTTCCCAAGGCATGGGCATGT
TTTCTAGAAGCTTCATGACTGCGTGAGGCATGTATTTCAAAGCTCCGAGGTATACTCGTT
TGTCGTGACGGTATTTCCGACTTGTCATGTCCCCGTGATCCCTGATGATCTTTCGGATGT
GTTCTGGAGGCATATCTTCTTTTTGGGCGTCCACGAATCCGAATTTGCGCTTTTCGGCAA
AACGCTTTGATTGCAGCTGAAGCCATTTTTGAGATTTTTCCTTGATCTTCTCTTCAGGAA
CATGCGATGGTTTGGGCGGCTGTGCAGGCGGCACGGGAGGCGCTGCAGCCGCGGCCGCCG
CGTGCGCTTGAAGCGCCGCTTGCTGAGCCGCCGCCAACTGCTGCTGCGCCATCATCGTGG
CCCAGGGGTTGGGCCCCAGCAGGTAAGGCGGCAGCGACATGGCTGACCGCCTTTTTTATG
GCTTCTAACTGATAATGTATTTTGTTACATGGAAAACGTCAATTTCACGATGCATAACAC
AATTTACAAACAAATTTGATACAAATCACTCCGCTTGCTTTTGGCGGCCATTTGCAATTC
GCCGTCATCGTGGCCCAGGGGTTGGGC
(7407 bp)

- SilkBase 1999-2023 -