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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR15701c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_RNA_polymerase-associated_protein_Rtf1_[Papilio_xuthus]
Ontology
GO:0003677 F DNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005694 C chromosome
GO:0006351 P transcription, DNA-templated
GO:0006352 P DNA-templated transcription, initiation
GO:0006355 P regulation of transcription, DNA-templated
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007219 P Notch signaling pathway
GO:0016570 P histone modification
GO:0016593 C Cdc73/Paf1 complex
GO:0035327 C euchromatin
GO:0042800 F histone methyltransferase activity (H3-K4 specific)
GO:0045747 P positive regulation of Notch signaling pathway
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0051568 P histone H3-K4 methylation
GO:0051571 P positive regulation of histone H3-K4 methylation
Transcript
Level		FPKM:6.23 TPM:6.11
ORF EntryO_TrvaFAMAMG18176_complete:A_TrvaFAMAMG_TR15701c0_g1_i1
Sequence
(Nucleotide)
GAAAACCCAGACTTGGTGGATGGCTTCTACATCAAGTATACTACATATTTGCTGTGAATG
TCGGATGTGTGTTTTCGTCGGATTTTAACTTCCTGTATAAGATATATTTTTCCTTTGTGA
CGCAGACGAAGTTTTGATCAATTATTTTTTTATTAATATTAACAAGCTTATTTTGTGTGT
AAACGCTAAACTAATTGTAATATATAATTATTTAATAATAATTACTATATCTCATATAAG
TCCGTGTCTCTTCTTGTATTCCTCGAGGTTTAGTGAACGTTTTGGTCCGGTCTCTTTCAC
TTTTGTTGTCACTTGTTTAGGTTGACTCGACACTGATTTTGCAGCAGGTAAATCTATGTC
TATGACTATATCGAAGTCGTGTAGTGAATATAAACTGGCGTCGGTGGAGGCTGGATTATT
GTCATTTCTACTTCTTTTAGATTCCTCGTGATTTTCGAGTCTATCTCTCTCCAACTTCTC
TTTCTCTATTCTCTCTTCTTCTTTCTGTATTTGTTCTTCTTCTGCCGCCGCTTGCTGATT
ACTTATTAACTCCTGTGTTCTACTGTTCTGTGACTTGAAGTTCATGACAGGTTTGGTGTG
TCTCCTCGTGAACGGATCGTCTGTCTTCTTTCCTTTGTTCGCTTTCACCTCTTCCATGAT
GGCTTTCTCCGCAGTTTCCACATTTAGTTTCCTGTTTCTGTTATTAATATATGAGATACT
TTGTATGGATGACGTCCGAGTTTTGTCGAGTTGACTCGCTCTCTCCTCTAACTCTTCTAT
TTTTGAGTTTAAATCCATTACTAATTCGTCGTCACCTCTCAACTGAGCAACATCTCGTTC
CTTCATGAGTTGTGTTTTCTTCATGGCGTAGTTTGTTGGATGGGAGCGGAATCTCTCTTT
CTCTGCTACTATCTTTTCTATGTCTTCTTCCTTAAATTCATACATCAAAGCTTGTTTCAC
TTCATTGATTTTGTTTCTTACAACGTCCATTGTGGGAGGTTTTTTATTCGCATCTTTAAG
AGCTTTAAACCATTTCTGAAATTCACCGTCCGTGAATTCCTGATTACTGACAAATTCCAG
TCTGAAAGCTCTGTCTTGTGTCCCATGTCTTAATTTAAAGCCTTTGTTTGTTCTTGTGTT
TCCTAAGTTGTATACTTTTCCTGTTTCGTGTACGTCTATTATTTCTGCTACTCTATAAAC
AGGATTTCCGTTATTATTCCCAATACCGATTCTAACGAAGCATCCTGTCACGACGCGAGT
GAAGAAAGGTAGGTGCACTAGTCTCTCTAGTTTGAACCTGCTGAGTCTAAGTTTGTTGAT
CTGTTCCCTGGTGTCAGCGTATTTGACCTCAACTTCTTGTCGTTTGCTCTGTCGGGGCTC
CTCTTCAGCGCCGGATTGAGATGAACTGGTAGAACTACGACGAGCTGATTTATTATCATC
GGAGTCAGATCCTGAATCATCAGAATAAATGTCGGATGCCTTCAATTTCACACTTTGTTT
ACTTGAACCACCTAATAATTCATCTGCATCAGCGGGCGCCCTCTGCACGCGCGAGGCGCG
CTGTGCCCGGAGCGCGGCCATGGCGTTCTGTCGCTTGTCGTCGACGGCTCGCTTGCGTTC
CGTCTTGCAACCGCCGAACAGTGGTGAAGCTGAACGTTCTGATGTTTCCATATCTTGTTT
ATCGTCTAAAATCTCCCCGGGACTAGGCGGAGTCTCTTCCGGTATACTTTGTGAATCTTT
TTCTTTATCTTTATCCTTTTCCGCTTCCGCCTCGGCAACTTGTCTCTGCCTCTCTCTTTC
CTTTTCCCTCTCATTATGTCTCTGCTCCCTCATGGCTCTCCTCCGTTTCCTGGCTTCTCT
TCTGCGAGCCACTTCACCAGGAGACGAGGACCCTTCCACTGCAGATCGACGAGCCAACCG
TAGTTTACGTTCTATCTCCCATCTTGTTTTCATCAAGTCTCTCCTCTCGATTCTCTTAAA
TATCTCTTGTTCGCGTTCTTTCTCGGACATGGCAGCCAAACGAGCTCTGTCTTCCTCATC
ACCCATGAGGTTGTCATCGTAACCATCATCAAATTCTTGTTCTGAATCAATGGAGTCATT
GTCTGATGAATGTGATGACACCTCACCTTCTTCCGGTTCACTAAAAGTTTCTTTCTCTTT
CTTCTTCTCAGAGCCGGCACTCTCCGTACTCTTCCTGATGTCCGATCTCTTTGGTTCCGT
ATCTTGTGACTCCTCATCTGAGGATGATCTTCTCGATGATTCCTTCTTGGACGTGTCGCT
TTTAGCATCGCTGTCTGAGTCTGAATCTGATGATGATGATTTAGAATGATTGCGTTTATC
ATCATTGTCATCCGAGTCACTGTCTGATGATTTGCTCGATGATCTGCTTCTTGGTTTGGG
TGGGGGCTGGGAATCTGTCTTCTTTTTCTTTTTGGCCAAATTTAGGAGTTGGGACTCTAA
ATCCGAGCACTCGCTGCTTGAATCGGAATCGATCAATGGCTTGTTCTTTCTTTTAGCCAT
TTCGTATGAATTCTACGTTAAAACGATCACAAAATGCGTCTGCTTGGATTTTCCTCTTTC
TGAAAGTCGTAAATCG
(2596 bp)

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