SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR15449c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_DNA_polymerase_zeta_catalytic_subunit_isoform_X4_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003887 F DNA-directed DNA polymerase activity
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006260 P DNA replication
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008408 F 3'-5' exonuclease activity
GO:0016035 C zeta DNA polymerase complex
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0019985 P translesion synthesis
GO:0042276 P error-prone translesion synthesis
GO:0046872 F metal ion binding
GO:0051536 F iron-sulfur cluster binding
GO:0051539 F 4 iron, 4 sulfur cluster binding
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
Transcript
Level		FPKM:0.19 TPM:0.18
ORF EntryO_TrvaFAMAMG18123_5prime_partial:A_TrvaFAMAMG_TR15449c0_g2_i1
Sequence
(Nucleotide)
ATTTAGTTGTGCAATGGATAAGGGTTATTACCTACAGGTATGTATCTTTGCTCTTCGGAA
AAACTCTTAGTGAAAACACCAGTTGACATGTCCCACAACCTACTCAACACAGACCCACAT
AAACTCACCATTTAAAGACATCGACGCCTAACAGCGAGAGGCATCGATGTAGCGGCGGCA
ACAACACCCGCGTCGCGTAGTACGCTACATGCGGTCGCAGTGAACGGTCGCGTGTGAGTT
CGAGCGGCGTGCGAGCCAGTCGCAACAACGGCACCCCGGGCGCACCCGCCGTCACCAACC
ACGACACGCGCCAGCCGGGACGAGGGACCGCTCGACGATCTCTCGTACCTATACGTTTGG
CTATTTCATTAGGTGGTGCGGAAGCCCCGGGCCGGTACCCCGCGGCGCCGTGGTACTCGC
GCGTGAACAACAACTCGTGCAGGGGGAGCGAGTTCTCCGCCAGCTTGCACAGTGTCGCCT
TCACCTGCCTCTTCACGACCGACATGTCGCCGTGACTGAATAGCTCGCATAGAGATTGTT
GTAGAAGCTTAACACCAGCTGGACAGCCATCTCTTCGGACAGTTTCTATTCCTTTTGCCT
CATAAGTAGGGTTCTCTTGATCAGAACTTTCATACATAAAACCAACATAACGTTTTTTCG
TTTGCAGAATGCACGGTTGATATACCTTTTCCAACTTAAGCGCAACTGGCGAGGGGTTGT
CGGCGGTCACGGCGTCGGCTATCTGCTGCCCGATCTCGAAGGCTTCAGCGCGACTTCGGC
CCGGAACTAACACGAACATAGAGTCTGTATCGCCGTAGATTACCTTGACATTCCAAGTAG
TGTTTTGTCGAACTAATTTGATAGCTCTTTCAAGTGTTTCTCTTCCTTTAGCCACAACAC
TATCCCCGACCTCCACGCACGGCATGCGACCACTAAAGTTAGCGGCCGTGTACCCGTACG
TTACGTTGGCTATTAATTTTAAACCCAACTGTCTCGAATGCATGGCTTTCTTCACAGTTT
CATCTGTCTGCATTTTCATAGTTTTCTTGACGGCCTGTCTGGCGGCCAGGATCCTCCTCA
GCAGCGCGGGGAGCACTCCGCGTCGAACTGAAGCCTTCACGAATCCGATCCCGACCGGCG
ACCAATGTACGAGACCATTTTTAGCGAGCGTCTCTAATTTTGATTTTGAAACTTTTAGCC
GCCAAGCTCCGAATTCGTAGGCGGTTTCACCATTTATATTTTGAACGCGTCCAATGCATG
TTGAGAAACAGTAGTTGTAAGCTATCATCATCGACGGATACAAGCTCTGGAAGTCCAGGA
CAATCACTGGATCTGAGTAAAAACGCGATTCTGGTTCAAATATGAGAGGTAGGCATTCAG
GAGCTCGCATGGCGGCTCTCTGTTTGATTGTTGGTGATAGCGCAATAAGATTGAGCGGTC
TGGCCGCTCGGAGCATCAGAGATTCAACACGAAATTGCGATCCTCTTGACAGAACTTCCC
ACCACTGCAGGCCAAATAGTCTGGCGAGTTCTGAAGTCCTGTTTATTATGTCAAGTTTTT
GTAGCATTCTGACTGTACCCGAGAGCCTCGTCAGATAGTACTCCACAGTGATCCACCTTA
ACATCCTTGAGTCATCGCACCACCATTCTGATAATTGCGCATAACTATATGACGGTACTC
GTTCCTTCAAAACTTCATACATACAGTTTTCAAAACTATAACTAGACAACGCCAGTTCGT
GACGAAATAATCGCCACACATTGAATATAACTCTCCCAATAATTCTACCTTCATAATCGT
ATTCGTTTTTCTTCCACCGTTTTTGCCTATTTTTCTCAATAATTCTAGATACGTCTTTTA
ATATATCTAGTCCTAAAATTTCCGCTCTCTCTAAAAAGTATCCCCATGAATTGAATTCTA
TTTCATACCCACACATAATATCTGGATCGTGTTCGTTAACTAATTTAATTACTTCATCTA
TTATTTCGTTTTCGTCACTAACATACTTTACGGGTACATTAAATACACATCTATTTAAAT
AGTCTGAATTTGAATCAACAACAATAATTTCGGTGACTGATTTTTGTAGAAAATGATCAT
TCGGACAGTCGTTGGTTATAGTGTAAAATATAGCTTTTATGGGATCGATTGCTGGATCGG
GATGCATTTGAGATCTCACCGAAGTGTGAACTTCAATAATCATTGAAGTTAGAAAATCAA
CGTTTACAATAGCTGGTCCACAAGGACTACTACTTTCCTTGTAGGTATCGGAATTTCCAA
AGCAGAGAAAGGATCCATCAGTGTTCATTGTTATTTGAAGACAATTATCTGTATTTGAAA
TCTCATTTTCACAATTGCCTGTGCTTATAATACTGCTGTTAATTACATCTTCATTTAAAC
CTAATGCTTGAGAATTATTGAGATCATCGATATTTTTCGTAATTTCTTGCTCTGTGGAAT
TTGAGAGCTTTTGAGCTTCGTTACGATCATTCATCCATTTCGTTACTTGTTTACTTGTTG
GAGGTCTAGCCACAGGTTCCAAAACATATCTTGAATTTCCTGCCAATAATGTTTTCAGTG
TCTCTGGTTTAGATTCTTCTTTGGTTTCATACCTTTGAAGAAATAGCATTTGTCTCCAAT
CCTCTATACTCACAGATTCTAAGACATTATCAAAGGGTTTCTGATCCCGAGACAGTTTAC
TGTGTAGCTTATAAACAGTTTGCCCGATTTCTATCTTTTCCCCAACATCTTTATGATTCG
A
(2761 bp)

- SilkBase 1999-2023 -