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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR14971c1_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_3B_subunit_1_[Papilio_machaon]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005686 C U2 snRNP
GO:0005689 C U12-type spliceosomal complex
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
GO:0034693 C U11/U12 snRNP
GO:0044822 F RNA binding
GO:0045815 P epigenetic maintenance of chromatin in transcription-competent conformation
GO:0071004 C U2-type prespliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:31.80 TPM:31.16
ORF EntryO_TrvaFAMAMG17777_complete:A_TrvaFAMAMG_TR14971c1_g1_i1
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTGGAATTAACTTCATTTATTTTCTATGTAAGCCCAGAAAACTTTC
TAGTCTATAATTATAATCTTAATACATATTTAGAGCATATAATCCAACTCGTATCGAATA
AAATGATTATTTGGATCGTTTTGTATTCTGGGGTATCCTGCGACGAGTGCGTCTTGTCCT
CCGATGTAAAGCGTGTTGTATATTTTCCAGTACACGTCTCGTACTTTTCTTGCGGGATGG
AATAAGCCCTGTAGTGCATATTGCAGTATTTTAATAGGTCCAAGTGCCACTCGCATTCCC
TCAACAGCATCCATGAAAGCTTGAACTAAATGTGGCGAAGTTTCAAATATATTTGGCCAA
ACATGATTTAGTAAATGTACCAAGGCATCTTCACAGCCAAAACCGTAAACGCCGAGAGAC
ATGTGTTTTATGGCAGCGCAGGCTGTTTGTCTGTGTACTAGATCTCTATCCATTAGCGCA
TCTTCCAACAGTGGGCAGACTGCATAAATATAATCTTTTCCCATTTCGCCAATGTATTCA
AACAGGAAAGAGAGCGATTTTAGTACACCATTTTGAACATTTAGTTCAGGAACTCTGTAC
TCATTCATTAAGGCGGGTAATACTGTGAATGGTGAACAAGTTTCCGCAACTATAGCGATA
GCAACAGTTGTGCATACTCTGTTTTGTCTCTCTTGCACTTTCAAATTATTAAGTAAAGTT
GCAAGCACATCATGGGGACCGATAGCTTTCGCAATATAACCGAAAGTGTTGACAGTCGCT
CGACGAATCGCCTTTTTGTGGGCCTTCAACAGTTCCAGTAGTTCAAAACATATTCTCATC
CATTCTCTCGCCGACACAAACTCTGGTCCTCTGTCGGCGATGCGACCCACCAAATCAATA
CAGTTCTCTTGCACTTTTTCGTGTCTGTTTTTCAAAATAGGTGTCAGTCTAGGTAGAAGA
TCCTTGATGGGCGGAGTCATTTTCGTCATACCAATAACATTGACTATAGCTTTCAGAGCA
CCAAGTATAGAACCTAGCACTTCGGGATATTCTTCTCCTAAGTACTCATATAGCACAACA
CCCAGATGACCCATTAATTTTTCCTCTTGACAAGTTTTCATGACTACAGCGATCCTGGAA
ATAAGATCGGCGGCTTGTTGACGAACTTTAGCAGACTTGTTGTTCATACGCCACAGAATA
ATACCGCATATCTGCGGTAAATACGGCTTCACGCGTTTGCCCAGTTGATTCACGATTGTT
CCGAAACCGTTCAGCATTACAACATCCTCCGTTGTCTGTTCTTGAAACGCGTACAATATT
CCGTCAATAAGCGCTTCTTCTAGTTTAGAATCAATGTCTGCTGCACCTAAATTAGCGAGA
ATCTTTTCAATAGACTCCATCACCATTTTTCTGTACTGCTCATTATCATCTTTCAAATCA
TCTACGATTCTGTTGATGATTTCTGATGCTCCAACCTTATTAGCTATTTCTACAGTGGTG
TCGACGAGTTGGCGGTAGTTCCTGCGATCGAGGGCCATACGATGATTCCAAAAGTGCTTG
AAGAAGTGTGGTAATATTTCATCCATTATGTACTGAGGCTCCACACCATCCGTGCCACAA
CATTGCTTGACTACCTTTAAGACAATTTTCTTCATTTCTTCATCTGGCGACTGGAACTCA
CGAATAAGGATCAACATCACTTCTCGTGTATAATAATTAGCGTATTCTGCGTCCATGAGC
GGAATCAGGTATCCGATAGCTTTGAGGAAGGCAGCCAGCCCTTTACCTCGATGTGTACGA
ATACCCTTCCACAGCGGTTTGAGCACCGAGTCGAAGGACTCGATACCGTAGGGCGTAGCG
GCCTCGGCGAGGGCGGCACTCGCTAGAGCGGTAATTGTTCGCACTTTTTGTTGCTCGTCC
ACCAGTCCATGCTCAATGATTTCAACAAGTGACTTCAGATGTGGTAATATGGCACAACCC
ATCAAAATAGCAATCTGTTGTACAATTTTTATTCCTGTGTGACGAGCTTGCCAAGACTTC
TTGGACCTACATACAGCTTTCAAAAAGGGCAATAAGGAAGGTATACCCAAAGCCGAAGCT
ACAACGGCAAAAGCTCTGGCAGTTGTATTTCTCACATATTCATCTATATTATCAATGTCA
GGTCTCATTGTTGAGATCATGGTAGCCAGCCCGGCCGCCTTCGCCAAGTTAGAGATGATC
TCACGACCCTCCACGCGAGCGTAGTAGTCTTCGTCGATGAGCAACGGTTCAATAACGACA
AGGATCTTATGAACGTAGGGTCGAACCAAGTCGTCCAATTTGTACAAAATACGGTCTATA
ACTTTGACCAGTAAATGTCGCTCTTGGTCTTCCAGTGTGGGGCTCATCAGCAATGGCAAT
ATTTGATTAAATAGTGGTCCGGCACCAAACTCTCTGGCCTTGTCAGTTATTTGACGTAAA
GCAGCTTTGCACATGGGCGGTGTACCGTTCTTAATTTTCAAGAGCAGCTTCATAATCTTC
CGTTCCTTAAGTTCATCCGGCGAGAGCGTGTCCTCGTCGACGTCGATGAGCAGTTTGTCG
AAGTACTGCGCGTCCTCGGGCTTCATGAAGGGCAGCTGCTGGTTCCCCTTGGGCTGCGGG
TCGAGCAGACGCGCCGCGGCCGCGCCCGAGCCGCCCGCCTCCTCCGTCTGCATGAAAAAC
CCGATTGGAGTACCGCCCAGGGGCGTGGGCGTCGCCGTCAGCTTGCGGGCCGGCGTCCGA
ATCGGGACGTACCCGGCAGGCGGTGGTAAAACCTTGTACCCAGGAGGGAACATGGCATCA
AGTTCTTCATCTGTATATGGTCTGTTACGTTCATCTATTTCCTTCTCCCATCGGTAGGCT
TGCAACTGCTCTGGGGTCATGGCTGCCACATGACCAGGGGTTGGAGTAGCTAGAGCCATG
GCTTTCACTCCCACTGGAGTAGACCCTCCGGGTGTGAAGACAGGCGTATGTGGCGTCGGC
GTGGCGAGCGACGGCGTGGCGTGCGAGGGCGTGGCGTGTGACGGCGTGGCGTGCGAGGGA
GTGGGCGTGGCCGGAGCGGGCGTAGCGCCGGGAGTCTCGTCCCATCGTGATCGCCGTTTG
GTGCCGGGAGTCGGAGTCTCCTGTATTGTGTCGACACCGGTACCGCGATCTGTACGCGGG
GTCTCAGCCCATCCGCTGTTGTGTCCCGGTGTTTCTCTATCTGTCTTAGGTGTTTCATCC
CATCGATTCCTCCTGGAAGCATGATGGGCAGGTGTCTCCCGCCCTGGTGTAGCATGTCCA
GGTGTGATGTGTCCGGGTGTGGCGTCCCAGACGCGTGCGGAGGGTGTGGCGCCGGGTGTC
TCACCGCCGCGTCCCCCTCCTCCAGGAGTCTCTTCCCATGTTCCTCTCTCAGCATCCCAT
GATGGTGTAGTTTGTGATGTAGGTGTAGCTGATACAGTTTTCTTCACAACTGGTGTTTCA
TCAGAACTTTGATCCCATCTGCCTTTGCGTTTAGCAACTGGTTTCACAGATTCTCCATTT
GACTGCACCACTGGCTTCAGAGTTCCTTCCCTTGCTTTTTCCAAAAGCTTTTTTCTAAGC
TCTGTTTCTTCAGCAAGAAGGTATTGTTCCTTCATAATATCAGTGTAGGTTCTTGAGCCA
ACATCAGGAGTTTTACCACCCTCTGCAAATGGATCATTTCTTTCAGGAGAGATAATCATC
CTGCGCCTTTTCTGTCTATATTCATCTTCTCTGTCTGCAATTGTTGGTCTTCTTTTGTCA
GCAAATGGGTCAAACTCTTTATCACTCTGTGCAATGTCATTTAATATTGAAGCTGGTGCA
GTATAGCCCGGCCTTTTCTGTGAAACGGGGACATTCTCCACATCATCATCTTCGACTTCA
TCATTAGCAGCAATTGATGTGACATATCCATCATATCGGGACTTGCCCCCTGCTCCCGAA
CTATCATATATGTCACTATCATAATATGTCTCTCCGAGGGACACACCTTTGTTTGAACCA
TTTTCAGGTAGCTCACTCTTCTTAGACTGTATTTCTCTTATTTGTGCCTCAATAGCTTCA
TGAGTCCTGGGTATTTTATCCATATTTAATAAATAATCGACATTTAAACTTAGTGTTGAA
AGAAAAATTAAGTTTTTCTGATAATTATTTGTAAATGTAGCCCAAGCGTGATTTGGTGAT
TATTTTTTTTACGTCG
(4216 bp)

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