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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR13712c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_nuclear_RNA_export_factor_1-like_[Plutella_xylostella]
Ontology
GO:0000166 F nucleotide binding
GO:0000346 C transcription export complex
GO:0003723 F RNA binding
GO:0003727 F single-stranded RNA binding
GO:0003729 F mRNA binding
GO:0005487 F structural constituent of nuclear pore
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005643 C nuclear pore
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0042405 C nuclear inclusion body
GO:0044822 F RNA binding
GO:0051028 P mRNA transport
Transcript
Level		FPKM:4.35 TPM:4.26
ORF EntryO_TrvaFAMAMG17038_complete:A_TrvaFAMAMG_TR13712c0_g1_i1
Sequence
(Nucleotide)
AACGCAGTGAAGTGAAGTATCACCCGGCAAACCAATTTATAAGACGTTGTCACGTCAAAA
TATTGAACATTAAATTTAAAAAGTGCATTTACATTTTTTAATAGGTATAGACCATAGAAG
TATCTCAAGTCCTACTAAAGAGTAGCATTTGAAACCTTTTGAAGACCTTCAGACCTTCTT
GTCATTTTAAAGTTGATATAATATATTCTACTACGTACTACTAATCAAAATGAAATCTAC
AAATATAAATGTTTCAAATATAATGACTTTAACAGACATTTTACGATTCGAAAAATAGCA
GTAATTATTTTGTATTGCACTAACATATGCATTGTTAAAGTGCGCGCACACCTAGGAGGG
GCAGGCCGCATTTTTTACAACAGGCTAAGTTACGAACCCTTTAGGTATGCACGCACTTTT
ATAACTGTAATTTCCAATGATACACAACATAAACAATCGGTTTTTTCATTACACAATATT
ATTCGACCCTCTACTTGCAACTTATAGTAAATTTGAAAGAAAAATAACAAATATAGGCAC
AATAATTCTAAAATAAAGAAATTACCGCAAAATATTACAATAAAAGTAGGTAACTAACTG
TAAAGAAAACTCTTTTTAAACTCAAACAATTAACTTCAAGATGTTCACAAAATTATTATG
CACAGATTATTTTTTTTAAATTACATATAACTATCAAGAAATGATGAATTAAGTTAGAAC
TTTAAAACGACCAGCATAAATTTGTTTTCCATTCAACTACTCGTAACCAACTTAATTCTC
ATTTCAAAAACACTAAACATTCATTATTAAATTTTTGCACTTACGTAAAAAAATATCTTA
TTGCTAAATCTAGCAACTATTGTCCTTAAAAATACATTTCAATTGCAATGTTCATTGCAA
CACACATTCTGCAAAACTGTACTTCATTTAAATTTTTGACGATTTTGACTTCAAAATTTT
TATTTTCAGTTGTTCTATTGACTTCGTACAATTTTTGATCCGTTCTTCATATTTGACACA
CAGAATGCTTACTTTCCATTAGTAAGACGTTTCTTTCTAGTTTCAACTCGCACTAATACA
TTATAGTATTGATAGTAACACTTGCTTGAGCAGTGTGAAGTCTCCTTGAAGTGTTTTGAT
GCTTCAGATCCAAGTGAGCTGATTATATGTGCGTTCATCAAGCATTCAAATGTAGATTAC
CTCCTGGTAGTATTATGTACTTGATAATCCATTTATATGACTGGTTCTGTAGATAACTTT
TTAAACTCCCTTCTGAGTTTCTTTATAATCACATTATCCAAATTCTTTTGTTTTCATAAT
CTGTATCAATTCAGCCACAATTTTCTCACTTTTTCACTCTTAATTTATACAAACTATTTC
ACAGTTTCATTCTTCTTCACATTTATACAAATATACAAAATTCTCAAGTTCCTATTACTA
AATTGATCACTTAACAAATGCTTCTGGAGGTATCTTGCCTTCCGATTGTAGTTGGTTGAA
TATGAATAAAGCACGCTGTAGATCCCAGCCGGTTTCTTGTAGGCAATTTACGCTCCAGTG
TTCATTCATTCCAGTCTGTTGTCCCAACATGTTAAGGAATTGCATTTTCTGGGCATCATC
TACCCCAGCTGTGGGTACGGGTGTGGGCGTCGGCGCCGGTGTAGGAGGTGTGGGCTCGAC
AGCGCCCGCTGAGAACGCTTTGTCCTCCTGTTCCTTAGTAGTATTAGTAATATACAGCAT
GTCATTGATGATTGAGAAACCACCGTTTGCATTAGGAACTATAACAAAAGTCCGATGAAA
TGATCGCATCGGATTGCTTGGTGTGTTGGTCTCTTTGAATACACCATTCATTGTGAGGAC
TATCATGGCAGGAGTAAATACTAATAAATCGACCGCAAAACCCATTAGATCGTGCGTAGT
TTTAGGCAGATCTGATAAAAATGACACAACTTGTAACCTTCCAGTTTTTAAATATCTACG
TCTTGATTCTCGTTCTGTTATGCGGATTAGATTTCGACTATTTGATATGTAGGAGTTTAA
TCTAGTGGCATTGGAGTTTCTGCTGTCATTCGTCAAATAATTGGCAGCCATTGACATAGT
AGCGTTTTCGTGGTAGGCTTCAAGAAGGGGTTGTCTTGATTCAGAGTCGTATAACGCATA
ATACTGAGTCAAGAACTCCCTGACCAGATCCTGTCCTGCTGGGTCCACTAGGAACGACTG
TTGGCGCGGTGGAAGCGATACTTCTTCTGATACGTCGAAACCAATGGCGGGGGGTAGGTC
GGCTCCGTCCTTTTCGTAGTGTAAATTTAAATTTATTATACAATTTTGATCTGTTTTGTT
TTAAAGCAAAGTTGTTATAAAGGACGTGTACAAATACACATATTTTGAAGATGGTTTCAA
AAACTTAGATTCAAAATCACAATGAATTCATCACTGCTTTATTTTATCCCATTTTGTTTT
TTTTGTGAAGCCACAATTGATCTACATTAAGAGCAATTATGATGATTCCTTATTTAATTG
CAGCTGTAACAAAACGCAGAAATAAAAAGTAGAATGAACAATTTGATTTTTAAACAACAC
TTACCAATCTTGCCAGTTTGGGAAACTTTTTCCGGACATCGCTGGAGGGAACAAACATTA
TGGCAACAAATATTAACTCTGAAACTCATTAAGATAATTAACAGAACAAAAGAACTATAA
TTAATTGATTTTACAACATCTGAAGTTCACTTTGAGACCTTACAACTATAAAAAAATACA
TGTTTTCCAAAACAAATTGTCAATCCATTTTCTATGTAGTAATGACATACTTTCATAGTA
TAGTAATAACAGTTTATACTTAAATTTGTCTTCAAATACTAATATTGTAATGTCCCAATT
AAATCAGATACTCAAAATTTACAATGTTGTAATATCATTTAATCACTATCAATTTACTAC
AATGTCACTACTTAGGTAGAAAGTTTTAAATCAGTTTTAAACCAAAAGAAAGCTAATGCG
ATCAAAAAAAATGTCAAATCGTCGACTCAGTGCTTGTTTGGCCAATCTCACATTTTCTAC
GAAAATTACTTTTTAATGCACTATTATAAAGAATAAAATTTCCATCCGACTGGTAAAAAA
TTCTAAAAC
(3129 bp)

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