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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR13706c0_g2_i4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:0.92 TPM:0.90
ORF EntryO_TrvaFAMAMG17026_complete:A_TrvaFAMAMG_TR13706c0_g2_i4
Sequence
(Nucleotide)
GGCATCACTCCGCTGTTCATGATGTTGATTCCAGATGTAATAATTCTATGATTTATAGTA
CTTAAATACAGTTCATTTACAAAAAGATTCAGATTTCAAGAACTGATTACTTATTTTTTT
CTTTAAAATTTAGAGATCTTAGTTCAGTCATTTCAAAAACTTTAGTTTCTGAACAATATT
TCTGCGTGTTCAAAACTCAATGAAATCATTTACAACAATAAATTCGTCTTTTGATTTCTC
TTTGCGTAAACTATAATTTTGTCACGTGTCATAAAATAAAAATTAATCCTTATTACAACG
GTTTAAAGTTGATTTTAGTAAAACACGATCAACACATTCATTAGACATCATTATTCAATT
TATTTCAGACTCAACATCACATACAAACAAGCGTTTTTTCACTTCGTTTGCGTTCAATTA
AAATGCGCCTGAATTTTGTGCAAAAACTGAGCTACTAAAGAAAAATAATTTATACAGGGT
GTTCTCAAAAAAAAAGTTGTTCAAACAAATTTAGAAAGATAAAGTTTAAATTCAGTTTTA
AAGCTAGCAAAGGATTAGTTGATTTCATAAACAGTAAAGTCTGAAATTACAGCGAAATAA
CTGCGAGTTACCTGTTACACGTTTAACCACTCAACGAGACCGTGAACCAAAATATTTTTG
TTTATTTAAGACAGTAACCAAAATTAAAATTGGTATTAAAACTTGTTTAGTTTTCAAGCA
AATTTGGAACTCCATGAATATGCCATACTTGAGATATCTAGTGACATACACAAATGAGTT
GATAATTATCACGTGAAGACTGAATGAAGAAATTAAACAGAACGAATGGAAGAACGAATG
AAAGATAGATATAATTTTAATTAAAATCTTTAGCACAGTTTTTTGCTACAAAACTCAGTA
ACGCTCAAGTTCATAATATTAATCTTATCTTTTCTCTAAACTTACGAACTATGAGGAATT
TCAAACGTAGTCGTATTGCGTTGGCGAACGTACACAATAGTACGCTTGTTTTACGTTGTA
TGGACCTATAGTACTGGCAGTACAGGGTCCATACGAAAGCGTCGGCTATGAGGCGTCGTC
TCCGTTGATGTGCGCGCCGCTCGCCGTGTAGAACAGCACGCACGGGGTCTTCCACCATAC
GCCGAAGTGGATCACCTCCTCCGTACTAACTGGGACGATGCACAAATCATTAAACATAAA
CCACTGCGTCTCCCCGTCTTTGACCGTGTGTATGTAAGCGACCAAGTTCTTAGGATTATC
TTCGACGCAGACGACGGCCGCGGACAGTGAATACTCCTCTTGTAGTTGCGTCGTTACGTA
TTTCTTTTTATGTTTGCTGGTATCCGGTCTGTTGATGGGTGAACTTTCTGCTGAACTCGT
TTCGATCTTATCATTAATAATGACGTCACCGTCAGACTGTAATCGTATGAGCAGCTGTAG
CGGTAACATACAGTGTGAGTCCGCACCGGACCCTTTGGAAGAACTGTGTGATGCGTTTGC
TCTTTCAGGATGTTTGAAATGACACCCCGGTCTCGCGCAGTGCAAACCGTATCGACACGG
TTTACCGCTGCCCCCTCTTTTTATATCTGACATATCTTTTTGGATTCCTTTAGCCCAATA
AGCTTTTTCTCGAACCGTAACCCCTCCACAATTGATTGCTAATATAGGTGGTAACCTCAA
CAACCGTCCCCGTTGCGTGGTCGGCGTGAACCTCGAGCAGTGATCGCACCACGCCGGCGT
GCTCCGGCGGGCCGCCAGCGACGCGCGCACCAGCTCTATGAACCCGCCGCGTGGCTCCGT
GCCGTTGATGCCCGTTTGCGGGTATTGTAACGCGCACGCTAGTACCACTGATTCCCTCCC
CTCCTCCTTATTACACTTCAAACATCTATTCAGCTGATGTCTCCCGATAGCGAAGAGCTG
CGATATCTCGCTCTCTTCCCGCTGCGTTTGTCGACTTAACTCGTGGTTCTCGTGGTTTTG
TAACGAACCCTCCACGCCTTCATCCCTCCCCGGCCATAACTCATTATCCTCTTGACAATC
AAACTCAGTGGGTCCCAAGAACTCGAGTTCCGTGTACTGATTATCATCAGTGTACTGTCC
GTTCATGACGGCTAGACGTTTGTTAGCGCGGGGTACTTTAGGCGGACTGTTCGCTATTAA
CGCTAATTCCTTTTCTTTCTTACGAGTTTCTAGTATTTCGAAGTGTATTTGGTGTAGGAT
GAAACGATTCCAGCTCTGTATAAGCGCCACCAAATCGACCCTAATATCGGGTCCCCGGTC
CGGCAGTATCAGTCCCAGCGCGGCCGCCTCGGGAACCGTTCGGAACGCTCGGAGGAAGTT
ACCCGCCTGACACGGAGTACCGCCTGACGTGTCCAGCATTCGGAAAAGAAAACCTAATTC
ACAACTCAAACAGAATTCTTTAGCACACGTATGAGCTAATAATGTCGCTTTCACCGGCGG
CGTGTAATACAAAACCTGTAACATCGCATTGCAGTATGAATTAGGTAATGTAGCTTCCAA
CCCAGGCTGTCCAGTCTTATTGTAATTCTCTAATTCTTCGTTCGAACCGTGCTTATTGTA
TCTTATATCCAGCTTCTGATAATGTTTCGGTATAGGCTGCATAATAATTTTGTTTTCGTT
TAACTTTGATATCGTCATTTCTTCGAATGATTCTTCGATGTACGGCATTTGATTTCTTCT
ACACGTTTTAGGGTTGGGTGCGTAACCAATGGGACCTTGCATTTTCATTGTTTTCAATAC
TTCTGGATCAACGGGTTTCGGTTTTCTATAAACTTTCCTGAAGAAAGACGGCGGCAGCTC
ATTGAACCATTTGCTACCGGTCGTCAACTGCGGCAGGGGAACCGATGAAAACTGGAACCT
AGGGTCGCTGAACTTAACGTAGGGTAAACCTTCCACGGGATCAGCAAATTCTGTTGACCT
TGAAAAGTTATTGTACAGCGGTTCGTGATTCTGCGTTGGCGTGAAAACATTCAAATGTCC
AGATTGATCTCCGAATACTAGAGCTTGGCTCGTCGAAGCTACGTCCATTACATTACACTG
TGAACTGTTGGTTTCTACCGTAAATATAGACTGCCTCTCTTCCGGTGCATTCACATGTAA
CAAACTAACGTGTCCATCACCGGAAGCAGCGACCGCCCGTCCCGAGAACGCAGGCAGGAA
ATGCAACAGTAATGGCGGCGAGGCCGTGTTTATGGTCCACGCGCCTTGTGCGGGCTTACT
GCCGCGTAGGCATCTGATGTCCCACACTACTATGTACGGTTCCGCGACTACACCAGCCCC
CGCCTGAGTGAATCCACATGTCAGCAACAAATCGCCCTGCATATCCAAGTCTGATAAGCA
GGCCGTATGTGCTCTAAACGTGTGCTCCGCTTTGGAAGGCGAGCGCATGTCTCTTAAAGC
CACGAAGCCGTTAGCACTACCGCATGCCACGTGACTGCTCCCACCGCTTCTTAGTACTGC
ACAACCTTCTTCTTGTATAGGAATAATTGTTTCGACCATTTTATTAAGATCCAGATCTAT
TAGTTTGTCTTGATGTCCTCCCATTAATAATTTCGTAGAACTAACTTGGTACAAGCATTG
CATGTCTGTCATGTTTGTTGATTTGTGCGTATGCCTAGGGAGACCTCTTCGTAACTGTTG
TCGTAGAGTCGTTTTTGTCAATACATATATACATTTTTCAACAGTGATTATATCTCTAAC
TTCATCAGTCTCATGTACTTGAAATGATGTGTACTTTTGCATGTTTGGACCGTAATATGA
GGTAACGTGACCACCCTGATTCCCCATCCATATTAATTCTTCATATTTATCAAATACAAC
AGCTGAAACTCCGTATCGGTCACCTCCATCAACCAGAACACTGCTACGAGCCTCATATTC
ACCTTCTACCGTAGGGATCATGAAGGGTGTGGAGTAATCTGTAGAGTAAGAACCTGTTAG
GAGTTGATCGGATGGCATGCATATTTCTGGGTAATGATATTCCATATTTACATTAACAAT
TAAGTTTATTCCGCTACATTTATACTAGTTGTTTGTTAAAAGGGATATCAACAAATTAAA
ACCAATAAATAAGGGATTGGGAAACACATCAAAACGATCTTAGCTACGACGAGGAAAGGA
TAAGG
(4145 bp)

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