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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR13706c0_g2_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_PAB-dependent_poly(A)-specific_ribonuclease_subunit_PAN2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000288 P nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000289 P nuclear-transcribed mRNA poly(A) tail shortening
GO:0000932 C P-body
GO:0003674 F molecular_function
GO:0003676 F nucleic acid binding
GO:0004518 F nuclease activity
GO:0004527 F exonuclease activity
GO:0004535 F poly(A)-specific ribonuclease activity
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008150 P biological_process
GO:0010606 P positive regulation of cytoplasmic mRNA processing body assembly
GO:0016787 F hydrolase activity
GO:0031251 C PAN complex
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:0.65 TPM:0.64
ORF EntryO_TrvaFAMAMG17025_complete:A_TrvaFAMAMG_TR13706c0_g2_i3
Sequence
(Nucleotide)
TTGCCGATCCCAGTTGAGTGGCTATAAAGCTTACCACAAATCATTAAACATAAACCACTG
CGTCTCCCCGTCTTTGACCGTGTGTATGTAAGCGACCAAGTTCTTAGGATTATCTTCGAC
GCAGACGACGGCCGCGGACAGTGAATACTCCTCTTGTAGTTGCGTCGTTACGTATTTCTT
TTTATGTTTGCTGGTATCCGGTCTGTTGATGGGTGAACTTTCTGCTGAACTCGTTTCGAT
CTTATCATTAATAATGACGTCACCGTCAGACTGTAATCGTATGAGCAGCTGTAGCGGTAA
CATACAGTGTGAGTCCGCACCGGACCCTTTGGAAGAACTGTGTGATGCGTTTGCTCTTTC
AGGATGTTTGAAATGACACCCCGGTCTCGCGCAGTGCAAACCGTATCGACACGGTTTACC
GCTGCCCCCTCTTTTTATATCTGACATATCTTTTTGGATTCCTTTAGCCCAATAAGCTTT
TTCTCGAACCGTAACCCCTCCACAATTGATTGCTAATATAGGTGGTAACCTCAACAACCG
TCCCCGTTGCGTGGTCGGCGTGAACCTCGAGCAGTGATCGCACCACGCCGGCGTGCTCCG
GCGGGCCGCCAGCGACGCGCGCACCAGCTCTATGAACCCGCCGCGTGGCTCCGTGCCGTT
GATGCCCGTTTGCGGGTATTGTAACGCGCACGCTAGTACCACTGATTCCCTCCCCTCCTC
CTTATTACACTTCAAACATCTATTCAGCTGATGTCTCCCGATAGCGAAGAGCTGCGATAT
CTCGCTCTCTTCCCGCTGCGTTTGTCGACTTAACTCGTGGTTCTCGTGGTTTTGTAACGA
ACCCTCCACGCCTTCATCCCTCCCCGGCCATAACTCATTATCCTCTTGACAATCAAACTC
AGTGGGTCCCAAGAACTCGAGTTCCGTGTACTGATTATCATCAGTGTACTGTCCGTTCAT
GACGGCTAGACGTTTGTTAGCGCGGGGTACTTTAGGCGGACTGTTCGCTATTAACGCTAA
TTCCTTTTCTTTCTTACGAGTTTCTAGTATTTCGAAGTGTATTTGGTGTAGGATGAAACG
ATTCCAGCTCTGTATAAGCGCCACCAAATCGACCCTAATATCGGGTCCCCGGTCCGGCAG
TATCAGTCCCAGCGCGGCCGCCTCGGGAACCGTTCGGAACGCTCGGAGGAAGTTACCCGC
CTGACACGGAGTACCGCCTGACGTGTCCAGCATTCGGAAAAGAAAACCTAATTCACAACT
CAAACAGAATTCTTTAGCACACGTATGAGCTAATAATGTCGCTTTCACCGGCGGCGTGTA
ATACAAAACCTGTAACATCGCATTGCAGTATGAATTAGGTAATGTAGCTTCCAACCCAGG
CTGTCCAGTCTTATTGTAATTCTCTAATTCTTCGTTCGAACCGTGCTTATTGTATCTTAT
ATCCAGCTTCTGATAATGTTTCGGTATAGGCTGCATAATAATTTTGTTTTCGTTTAACTT
TGATATCGTCATTTCTTCGAATGATTCTTCGATGTACGGCATTTGATTTCTTCTACACGT
TTTAGGGTTGGGTGCGTAACCAATGGGACCTTGCATTTTCATTGTTTTCAATACTTCTGG
ATCAACGGGTTTCGGTTTTCTATAAACTTTCCTGAAGAAAGACGGCGGCAGCTCATTGAA
CCATTTGCTACCGGTCGTCAACTGCGGCAGGGGAACCGATGAAAACTGGAACCTAGGGTC
GCTGAACTTAACGTAGGGTAAACCTTCCACGGGATCAGCAAATTCTGTTGACCTTGAAAA
GTTATTGTACAGCGGTTCGTGATTCTGCGTTGGCGTGAAAACATTCAAATGTCCAGATTG
ATCTCCGAATACTAGAGCTTGGCTCGTCGAAGCTACGTCCATTACATTACACTGTGAACT
GTTGGTTTCTACCGTAAATATAGACTGCCTCTCTTCCGGTGCATTCACATGTAACAAACT
AACGTGTCCATCACCGGAAGCAGCGACCGCCCGTCCCGAGAACGCAGGCAGGAAATGCAA
CAGTAATGGCGGCGAGGCCGTGTTTATGGTCCACGCGCCTTGTGCGGGCTTACTGCCGCG
TAGGCATCTGATGTCCCACACTACTATGTACGGTTCCGCGACTACACCAGCCCCCGCCTG
AGTGAATCCACATGTCAGCAACAAATCGCCCTGCATATCCAAGTCTGATAAGCAGGCCGT
ATGTGCTCTAAACGTGTGCTCCGCTTTGGAAGGCGAGCGCATGTCTCTTAAAGCCACGAA
GCCGTTAGCACTACCGCATGCCACGTGACTGCTCCCACCGCTTCTTAGTACTGCACAACC
TTCTTCTTGTATAGGAATAATTGTTTCGACCATTTTATTAAGATCCAGATCTATTAGTTT
GTCTTGATGTCCTCCCATTAATAATTTCGTAGAACTAACTTGGTACAAGCATTGCATGTC
TGTCATGTTTGTTGATTTGTGCGTATGCCTAGGGAGACCTCTTCGTAACTGTTGTCGTAG
AGTCGTTTTTGTCAATACATATATACATTTTTCAACAGTGATTATATCTCTAACTTCATC
AGTCTCATGTACTTGAAATGATGTGTACTTTTGCATGTTTGGACCGTAATATGAGGTAAC
GTGACCACCCTGATTCCCCATCCATATTAATTCTTCATATTTATCAAATACAACAGCTGA
AACTCCGTATCGGTCACCTCCATCAACCAGAACACTGCTACGAGCCTCATATTCACCTTC
TACCGTAGGGATCATGAAGGGTGTGGAGTAATCTGTAGAGTAAGAACCTGTTAGGAGTTG
ATCGGATGGCATGCATATTTCTGGGTAATGATATTCCATATTTACATTAACAATTAAGTT
TATTCCGCTACATTTATACTAGTTGTTTGTTAAAAGGGATATCAACAAATTAAAACCAAT
AAATAAGGGATTGGGAAACACATCAAAACGATCTTAGCTACGACGAGGAAAGGATAAGG
(2999 bp)

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