SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR13661c1_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_SPF27_[Papilio_polytes]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0003674 F molecular_function
GO:0005634 C nucleus
GO:0005662 C DNA replication factor A complex
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030054 C cell junction
GO:0071011 C precatalytic spliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.09 TPM:5.97
ORF EntryO_TrvaFAMAMG16884_complete:A_TrvaFAMAMG_TR13661c1_g1_i4
Sequence
(Nucleotide)
TTTTTTTACAGTATAAACTCTTTATTGTTAACTTTGATAAACATTTCATAAAAATATAAA
ACTAATATTTGTACACTAAGTTTAACCTATTTCTTAAATGAATAGCATTTCATTAAGGCA
ATGAGTTCCATACAACTAGTTCCATTTATAATCACAAGAAAAAAATTCAGAGGGGATCCA
GAATATATATATTTTTCTAAATTCAATTTTTTTTTTTACTTAACTCACCAAAAAGTTGGA
ATGTGATCATAAAAATAAAAAGGCCTTAAAATAATGAGTATTTTTAAAATTTCAGTTAAA
AATATCTTATTTCAAAATTTTTTCTAGCATTTCGGGATCCAGTCCTTCCAATGAAATTTT
TAGTTTGACTGCCTGTAACGGAACGCCTACTTGGACCATTTTAACAAATTTCTCATACTC
TGACGGTATTTGAGTTTCAGATGGTAATGCAGTTTCTTCTATTTTAGTTTGTGAATTTTC
TGTGTCCGTTTTTGTTTCTATTTTGTTGTCTGGTTGGTTCTCTTCTATTGTGGGTTTTTC
AGCTTGTTTTGGAATGTCTAATTCGGGTATTGATGAGAGCTTAGATTCTAGTAAAACCAT
AGCAGCATTCACTTTTTCCAGTTTCCTTTCAAATTCCATTAACTTCTGCTCGCAATTTTT
CATGAAAGTGTTCAAGAATTGTACATTTATAGTAAGGAAATGATTTACGAAAGCCAATGT
TCGTTTTTGGTGTAATGCAGCTACCTTTGATAAATCAACCTCTGAGGATCCAGGATTAGG
CAAATCTTCGTGGAGATTCATCTTTGTTTATTTCGATAAAAACTTATTAAACATAAAACA
TTTTCTTGCAGAATTTCAACTTAAAACTACAATATAACTCCGCGGATCCTAAATAACTAT
GAAACTAAAACTAGAAATTAATGATTTTGAAAATAAAATAAATCAGCTCAACAAGCTGAA
ACTTTGTTTTGGTTTTGATGACATCTGACATATTAAATTTGATATTGACAGACCATGTTT
CTTGCAGAACTTTCACTGTCAGTGTCACCAATTGTCAATCTTGTGTTTCGTTTGTTTGTC
TCAATTGTCTCCAGTGAAGTGTTTTGATTATAATTTCGCATTATTTTGATATTTTTACTG
ACGGCAGAGCGCCATAAATAAAGTGAAGTGAAGTGAAGTGATATTTTCATGATAAAATTA
ACAAAATAGCTGCGTTTATTGAAGATTAATAAGATTATTTGTGAAAAATGGCCGGAGAAG
TTGTCGTAGATGCTCTGCCGTACATAGATCAGGGTTACGATGATCCTGGAGTCAGGGAAG
CTGCACTGGCTATGGTAGAAGAAGAATGCAGGCGATACAGACCTACTAAGAACTATTTAG
AGAATGCAGGACCTGAACCCAGTACAGCATTCGAAACTCCAGCATTACAACGAGAAATGG
AGAGGGTTCAACAGAGATTACCGATGGAACCTTTATCTATGAAGAGGTATGAACTTCCAC
CTCCTCCTGTAGGCAAAATGAGTGAGCCCAGCGCATGGGCAGAATCGGTAGACAATTCCC
ACGCCCAGCTCTCCCATCAAGCCATCAGGGTCCTCAACTTGGAGTTGCAGCTGGAGTACG
GTTCGGAAGCCTGGAGATCATATCTCAACACGTTACAGTCTTTAGTAGCTAAGGCACAAA
ATGAACACAATCAGTTAAGAAAACAGATAGGATCAGTTAATTGGGAGCGTAAACGCGTGC
AGACGGCGAGCGGAGCCCGACTTCGTTCATTGCGGCGACGGTGGGCGCAACTTGTGTCAG
ATAACTACAGGCTTGAGAGAGCGCTATTACATTTGCAAAAGGCTAAAGGAGAAGTATCCA
TTGAGGAAGGAGAGGAAGCAGACTTGGACATTGTCAAATCATTACCAGAGAAACTCAACT
CACAAACGGAAAAGGAGGTGCAGAAGAAAATAGAAGATATGTTTGCAGATTAAAAAATAA
GAATAAATATAGTTAAAAGCTTAAAAAAAAAAAAAAAAAAAAAAAA
(2026 bp)

- SilkBase 1999-2023 -