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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR13645c1_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_6_[Amyelois_transitella]
Ontology
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0003713 F transcription coactivator activity
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006403 P RNA localization
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016607 C nuclear speck
GO:0043021 F ribonucleoprotein complex binding
GO:0044822 F RNA binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0050681 F androgen receptor binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:5.63 TPM:5.52
ORF EntryO_TrvaFAMAMG16835_complete:A_TrvaFAMAMG_TR13645c1_g1_i1
Sequence
(Nucleotide)
AATTGAGTTTGTTTTGTGCACTGCTGTATTTTTATTAATTTGATAACTAATAACTATAAA
CGTTATTTAAACTACAATTCACGGAATAGCAAAAGTTCTGTCGTTATTTAAAAAATGTCT
GTACCACCACAAGCATTTGTCAACAAAAACAAGAAACATTTTTTGGGTATTCCTGCACCG
CTAGGTTATGTAGCAGGAGTAGGAAGAGGAGCTACCGGTTTTACAACACGATCTGATATC
GGTCCTGCACGAGACGCTAACGATGTGTCCGACGATCGTCATGCACCTCCAGCGGCTAAA
CGTAAAAAAACAGAGGAAGAAGATGATGATGAAGATTTAAATGACTCTAATTATGATGAG
TTCTCTGGATACAGTGGATCTTTGTTCTCTAAGGATCCTTATGACAAAGATGATGCAGAA
GCTGATGCTATTTATGAATCTATTGACAAGAGAATGGATGAAAAGAGGAAAGAATACAGA
GAAAAGAGACTTAAGGAAGACTTAGAAAGATATCGTCAGGAAAGACCCAAAATCCAACAA
CAATTTTCTGATCTAAAACGGGAACTTAAAACTGTGTCTGAAGATGAATGGGCAGCGATC
CCCGAAGTGGGCGATGCTCGTAATAGAAAACAGCGTAACCCTCGAGCTGAAAAGTTCACA
CCATTACCCGATAGTGTGTTATCAAGGAACCTGGGTGGGGAATCATCTAGCTCTATAGAC
CCAGGCTCAGGACTGGCTTCTATGATGCCTGGTGTAGTGACTCCTGGAATGTTAACTCCA
TCAGGTGACCTTGACTTAAGAAAGATTGGTCAAGCTAGAAACACTCTGATGACGGTAAAA
CTGTCCCAAGTGTCAGATTCTGTGACAGGTCAAACGGTAGTCGATCCCAAAGGGTATCTA
ACAGATTTACAATCAATGATACCTACTTATGGTGGTGATATAAATGATATCAAGAAAGCT
AGATTGTTGCTGAAATCTGTGCGTGAAACTAATCCAAATCATCCACCTGCTTGGATTGCT
AGTGCTCGATTGGAAGAAGTTACTGGTAAAGTGCAAACAGCCCGTAATCTAATAATGAAG
GGGTGTGAGGTAAATCCGAGTAGTGAAGAGCTCTGGTTAGAAGCCGCTCGCCTTCAGCCG
CGGGACACGGCGCGGGCGGTCATCGCGCACGCTGCTCGGAACTTACCCCATAGTGTTAGG
ATATGGGTCAAAGCTGCGGATTTGGAACAGGAGCCTAAGGCTAAACGTAGAGTGTTCCGC
AAAGCCCTAGAACACATTCCAAATTCAGTTCGACTTTGGAAAGCCGCCGTCGAACTCGAG
AATCCAGAAGACGCCCGTATATTACTATCTCGGGCTGTAGAATGTTGTCCTACCAGTGTT
GAATTATGGCTGGCCTTAGCGAGACTTGAGACTTATGAAAACGCAAGGAAAGTGCTTAAC
AAAGCGCGTGAGAATATACCTACTGATCGACAGATTTGGGTGACAGCGGCTAAGCTTGAA
GAAGCACATGGTAACACACACATGGTGGAAAAAATCATTGATCGTGCGATTACATCTCTA
AGTGCGAACGGCGTTGAAATCAACCGTGAACACTGGTTCAAGGAGGCCATGGAGGCTGAG
AAATCTGGAGCCGTTTCAACATGTCAGGCTATAATTCGTTCTGTGATCGGTCACGGCATC
GAACCAGAAGATCAGAAACATACGTGGATGGAAGACGCGGAAGCGTGCGCAAACGAAGGT
GCATTCGAATGTGCTCGCGCAGTATACGGCTACGCTCTGTCCGTGTTTCCGTCCAAGAAG
TCCATCTGGCTCCGCGCGGCCTACCTCGAGAAGCAGCACGGCACTCGCGCCAGTCTCGAG
ACGCTGTTGCAGCGCGCCGTGGCTCACTGCCCCAAGTCTGAGGTGCTGTGGCTTATGGGA
GCCAAGTCTAAGTGGCTCGCGGGTGACGTGCCAGCCGCTCGTGGTATTCTATCATTGGCC
TTCCAAGCCAATCCTAATTCTGAAGAGATTTGGTTGGCTGCTGTCAAACTTGAGAGCGAG
AACAAAGAATACGATAGAGCGAGACGGCTGCTTTCCAAAGCTAGGGCTTCTGCACCTACA
CCAAGGGTGATGATAAAATCAGCGAAACTAGAATGGGCACTCAACAATTTGGATGTCGCT
ATAAAATTACTGGAAGAGGCGATCAAAGTTTTTGGCGATTATGCCAAATTACACATGATG
AAAGGGCAAATTGAAGAACAAATGGGCAAAGACGATGACGCCCATAATACTTATACTCAA
GGGTTAAAAAAATGCCCAACGAGTGTACCTATGTGGATATTGCTTTCGAGGTTGGAGGAG
AAATTGAAGCATGTGACCAAAGCTAGGTCTGTTTTGGAAAAGGCCAGACTTAGGAATCCT
AAAAATGCAGAGTTATGGCTAGAGAGTGTAAGATTGGAGAGACGTAACGCCAGCGCTGAG
ATAGCCAACGCGGTGATGGCCAAAGCGCTACAAGAATGTCCCACCGCCGGCCGACTGTGG
GCCGAGGCTATCTTCATGGAGTCACGACCGCAGAGGAAAACTAAGAGTGTGGATGCATTG
AAGAAATGCGAACACGACGCTCATGTGCTCCTCGCCGTCTCGCAACTTTTCTGGACGGAA
CGGAAACTAAACAAATGCAGGGAATGGTTCAACCGAACGGTAAAAATCGACCCGGATCTC
GGTGACGCTTGGGCTTATTTCTACAAGTTTGAGCTCCTCCATGGAAACGAACAACAACAG
GAGGACGTTAAGACACGGTGTAGGGCCGCTGAACCTCACCACGGAGAGAACTGGTGCAAA
GTATCTAAAGATATCGTCAACTGGTGTTTTAGCACCGATCAGATACTGTTACTAGTTGCT
AAAAACTTACCTGTGCCTACTTAATTTTAATGACGGAAAAATAACACAAGTTTTAGGTAA
AAAGGATTAACACGAAAATTGACTTTTTGTAGTTAATTAAAAATACGATCGTTATGACGT
TAAGAAATGCATTTAACACTAATGAGCATAAGTCAATGTTAGATAGTAAAGTATTAATTA
TACTTTACGATTAAAATGCTAACTATTGTTAAGTATGGTATACTGAGTAACGGTAATTTG
AAATATATAACAATAACTCTCTTCCGTTGTAAAAGTATTTCAATAGGGATGTATTTAAGT
GTTAAAGTTCGGCCGTTCAGAGAATGCGTTCTTGACACCTATCAATTAGTCACGACTAAA
TATTTTTTA
(3249 bp)

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