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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR12c0_g3_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protein_ref(2)P_isoform_X3_[Bombyx_mori]
Ontology
GO:0000407 C phagophore assembly site
GO:0000932 C P-body
GO:0001934 P positive regulation of protein phosphorylation
GO:0002376 P immune system process
GO:0005080 F protein kinase C binding
GO:0005515 F protein binding
GO:0005575 C cellular_component
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005770 C late endosome
GO:0005776 C autophagosome
GO:0005783 C endoplasmic reticulum
GO:0006511 P ubiquitin-dependent protein catabolic process
GO:0006914 P autophagy
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0016234 C inclusion body
GO:0016235 C aggresome
GO:0016236 P macroautophagy
GO:0016239 P positive regulation of macroautophagy
GO:0016605 C PML body
GO:0019901 F protein kinase binding
GO:0030154 P cell differentiation
GO:0031410 C cytoplasmic vesicle
GO:0031625 F ubiquitin protein ligase binding
GO:0042169 F SH2 domain binding
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0043122 P regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 F ubiquitin binding
GO:0044130 P obsolete negative regulation of growth of symbiont in host
GO:0044753 C amphisome
GO:0044754 C autolysosome
GO:0046872 F metal ion binding
GO:0051291 P protein heterooligomerization
GO:0061635 P regulation of protein complex stability
GO:0070062 C extracellular exosome
GO:0070530 F K63-linked polyubiquitin modification-dependent protein binding
GO:0097225 C sperm midpiece
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
Transcript
Level		FPKM:93.10 TPM:91.22
ORF EntryO_TrvaFAMAMG22_complete:A_TrvaFAMAMG_TR12c0_g3_i1
Sequence
(Nucleotide)
CTGAAGGTCACATCTATTTTTTTTTTTTTTTTTTTTTTTTACATTTTCCTTTATTTTTCA
ATACACCAATTACAATGTAATTAAAGTTAAGAGTATATAATTAATATTGAACTTAAATAG
TAAAATTATAAGTAAAAAATCACAAAATTCATAAAGTAACATAAATCATTGTTACAAACT
GAGGCGAGTTTCATTGTCATTTTCAAGTTCTTACGCAAAGTCCTTAATACGATAGTATTC
CAAACCCATTTTCCTCCACCTCACTTAACCTAACTTAAAAATAATTGTACTTAACGCACC
AAACATAAAATAAATCATATTACATAATTAAAATAATCTTGTCCTTATCATATTGGATAG
TATAGTTTGGGCAAAGAAATCACAAAAGCGTTCCATTTATTGCACTGAAATAAAAAAAGC
TTCCTGAAGGTCACATCTATTTTTTTGTTTTTTTTTTTTTTTTATTCTACACATGTGATT
ACATGTATAAACTACTACAGTCATTCAAGTATCGCTAACCGATACTGAATGTTAGAAAAA
TGTTTCAAAATTTCAATGTGACATAAAGTCACTTATCCTAAACCATCACAGTATGTCATT
CCCTTTTAAAGTACACACATTGGTGCTATTAAGATAACTTCTCTGAGAGATTCAGGTGCA
ACTTTCATATTGTGTCATTATCGTTCTAAACTTTGGCACTTTCGATGATTTCCATTTAAC
TTTAGGCCATTATTGAGCTATACGTTTCGTACGTAGCATTTATAAATGCATATTTCAGTT
CTACAATGTGTGTACATATAAATTTCCATCACAGATATCTCCCGTACAAACTAACACATT
TACAACACACTAACATCAATTTCAGACAATAGTCAAATACTGTGGAGTACAGTTTAAATG
AATACGTAATTCTAAAACATTTAAAATTCACACAAATTCGTGTTTTATTGAAGTGATTAT
GTAATATTGGAATAGAAATAGTAGAATGTATACAAGTGTTTCTACTGTTGTAATGAAATG
GGGAATGTTTACTTCTTGGGGTTGACCGGGGTAAGCAGGTCGAGTACGGCAGCAATGTTG
CCGTCCTTCTTCTCCAGCAGTTCAACCAGCCAACCGCCTTCGTTGGTGAAGCCCATGGCA
AGCATTTGGCGCAGGGCAGCGTCAATGTGGGGCTTGGCATGGTAGAAACGCGGAGGCACG
GTTTGTTGTACCGGAGCGCTTTGTCCGGCCGGTTGCGGCTGAGTGGTTGTTGGTTGCTGA
GCCGGTTGCTGGGTCACCGGGACTTGGGGAGCGCTAGGGGCAGCCTGGGCTGGGCGCTGC
GGCACTTTGGGATCCAACACGGCAGTAGCGGTGTTAAGTGGTGGGTAGATAGATTGTCCA
ATAGTAACACGCTCCTGGAACTCTTGGGACAGATTGAAGCCGATCGGAACCATTGGGACA
TCGGCAACCTGCTCGTTGGCGTTAGCATCCATCAGATCTTTGTCCTTGTTCACCATGGTC
CAATCATCAGCCTTGTCCGGAGAGCCCTCCTTCTCAGAACCGGAAGCATCAGAGTGGTCA
GAGTTGACAGACTTGGCGTCGGTCTTGTCAGCTTCCGTGTTGGCCGCCTTGGAGGTGGTT
GCCTTCGGCGGGGCGGAGATCACGTGGATCGTCATCTTGCCCTTGGTAGCAGGGTGCTTG
GTGTTGATCAGGCTAATAACACGTTGTAGCTCCTGGAGCACTTTGGGATCGGAGCCCGCA
ATAATTTCGCGCTGGATGCGGTTTATCTCCTCATCGGGAGTAAGAGCCTCCTCGGGTTTT
TCAGCTTTCTTAGCGTCAGTTGGGGCAGCGTTTTGGGTCCCGGTCTGCTCCTGAGTCTTA
GCCTGATCAGCATTTTGAGCCTGAGCTGGCTTAGGTTTTTGAGTGACAGTGTTCTCGATG
TCGACACCGATGTCGCCAACGAGGTTGGTGAACTCATTCATGTAGGTGGCGAAGGTTTCG
AGCCAGCTTGGGCGAGGGCGACGCTCGGCCCTTTCAGTGAGGTTTTGATCGCGACGTTTC
AAGTTGCTATGACGATCGTGCCTGTTCTTCTTGTAGGGGCATTGATCAGCAGCAACCGCC
TTGAAAATGTGGCGGGATCTCTTGATGGCCGCCTTGATCAAAGTGCGCGACATGTCCGAT
GTTGGCAGACGGACCATGCAGTGCTCGTTGTGGTTCCCGGCCGCCTCGCATCTCGAGCAG
AGGTCGAAGTCGGGGCAAATGGCGCACTTGTAGCGGAACCCGACCACGGGCCGATCGCAG
ACGTTGCACACGACGCCCGCGTGCACCGCCGCGTTACCTTCATTGTTGGGTGGAATCAAA
GTAGCATCAATTTCAATTTCGCAGTCATCGTCTTTTGGCTCCGAATTCTTGCAATAAATA
TACAGCTTGATCATGGTGCTCCCCAAAGACATCAGGGCAGTCATCATTTCATCATCAGAC
GAAATGACAACATCATCATCCTCCTCATCTTTCCATGTTACAGTATAGGCCTTGTGGCAG
AGTCCAGGGTAAACATCTTGGAGTTTAGCATTCAAGTAGTGGAAACTGGTCACTACAGTC
TTCTCTATGCCGAACCTCCTAACTTCAGGCTGGGTGCCCTCGTCAAAGAATGCGTAGACT
TTAAAAGGTACTTGATCTTCCATTTTCGAAAAATAGTATTACTTTAATCACTGACCACAA
GAATAGACGCGTGTGTAAACGAAGTATTAGCAAGCGAATGTTGTGCTTTTAGGCAGAGTT
ACTTTTTATATACTTCTAAAACAGCATGAATCACGTAAATTCGAATGTTGGAGACGATTG
TAGCAAAAACACTAATTTGTTGTGCAATACAACCAGCTGGTTGACAGAAAAACAAACGCA
GTGTTG
(2886 bp)

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