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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR12247c1_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		syndecan_binding_protein_[Bombyx_mori]
Ontology
GO:0001948 F protein binding
GO:0002091 P negative regulation of receptor internalization
GO:0005109 F frizzled binding
GO:0005137 F interleukin-5 receptor binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005615 C extracellular space
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0005829 C cytosol
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005895 C interleukin-5 receptor complex
GO:0005912 C adherens junction
GO:0005925 C focal adhesion
GO:0007265 P Ras protein signal transduction
GO:0007268 P chemical synaptic transmission
GO:0007346 P regulation of mitotic cell cycle
GO:0008022 F protein C-terminus binding
GO:0008284 P positive regulation of cell population proliferation
GO:0010718 P positive regulation of epithelial to mesenchymal transition
GO:0010862 P positive regulation of pathway-restricted SMAD protein phosphorylation
GO:0016020 C membrane
GO:0019838 F growth factor binding
GO:0030036 P actin cytoskeleton organization
GO:0030054 C cell junction
GO:0030307 P positive regulation of cell growth
GO:0030335 P positive regulation of cell migration
GO:0030511 P positive regulation of transforming growth factor beta receptor signaling pathway
GO:0032435 P negative regulation of proteasomal ubiquitin-dependent protein catabolic process
GO:0035556 P intracellular signal transduction
GO:0042043 F neurexin family protein binding
GO:0042327 P positive regulation of phosphorylation
GO:0042470 C melanosome
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0045121 C membrane raft
GO:0045545 F syndecan binding
GO:0046875 F ephrin receptor binding
GO:0046982 F protein heterodimerization activity
GO:0047485 F protein N-terminus binding
GO:0050839 F cell adhesion molecule binding
GO:0070062 C extracellular exosome
GO:0072562 C blood microparticle
GO:1903543 P positive regulation of exosomal secretion
GO:1903553 P positive regulation of extracellular exosome assembly
GO:1903561 C extracellular vesicle
Transcript
Level		FPKM:19.26 TPM:18.87
ORF EntryO_TrvaFAMAMG15524_complete:A_TrvaFAMAMG_TR12247c1_g1_i1
Sequence
(Nucleotide)
GTGACAAATATCAACAGTCAAATTGTCAAATTTATAATGTAAATAATTTGTCAATTTTCT
TGTTTTATCAGTGTTCAACTGACTGCGCTTATTAGCTTCGTGTTACAGATAAATAACACA
TTGATTTGTAATTTAACTTTATAATCAACTATTCCATAAAGCCGGGCAAAATGTCGTTTT
ATCCATCTTTGGAAGATATGAAAGTGGACAATATGATGAGGGCTCAAATATCACAGCCCC
AAGCGCTGCCTTCTTATGGCGGTCATCAATTTGGTGCCACGCCTAGTGCTCCGGCTGCTC
CTACAGCTCCTAGTGCTCCAGGGGCTCATGTCTACCCCACTCTGGGAGAGTATATGGGGA
TGGAGTTATCTCAGGCAGTCATTGCTCTAAACATGCCCGAATATCAAGTACAACAGGTGC
AGCGTCCTAACTCCAATGTAATAGCACCATTGTCTTCCAATTCTCTGACCTTGGCAAAAG
CAACAGTGACTCAGGCTATTAGACAAGTTATTCTATGCAAGGACAAAAACGGAAAGTGCG
GGCTCAGGCTCCATGCAGTGGACAGTGGAGTGTTTGTTTGTTATGTTGCCGAAAACAGCC
CTGCTGCATTGGCAGGGTTACGATTTGGTGACCAAATATTAGAGATTAACAACGTGACTG
TGGCGGGTATGACAATGGAAAAATGTCATGACATCCTCAAAAAAGCTCCCTCTAACAATA
TCACCATGGCTGTTCGTGACCGGCCATTTGAAAGAAATGTAACTCTCCACAAAGACTCGT
TAGGCCATGTTGGATTCCAATTTAAAAATGGAAAGATAATGGCTTTAGTTGTGGACTCAT
CAGCTGCTAGGAATGGATTGTTGACAGACCACCAGATACTGGAAATAAACACAATTAATG
TTGTTGGCATGAAAGATAAAGAAATATCTAGAATTATTGAAGACAGTCCATCTGTTGTTA
ATGTGACTATAATACCATATTGCATATATGAACGCATGATAAACAAGATGTCATCATCAC
TTTTTAAGGGACTGGATCGAACCCCAGCTGTTTAATACAATTGTTTCTTTTGATTTTATA
TTCACTGCAACTGAGTGCACCTCTATGATCACAAATCTTATCAAATTATTGTGCAATTAT
ATTTACGTCCTATGGTATATTTTTGATTATGTTTAACAACACCTATATTCTAGTAATAAT
GCCTTCAAAATTGTAAGTTCATTAACAGATAGATTCAACGGCTGGTTCTGGCTAGCTTGA
CAGACGTTTTCAGTTAAGTCAACAAATATTATTTTAAGATCTAAATTGTAGAATTTGCAT
TTATTAAAGTAAATTTTCATCATTGTTAGTCAACTATAAGTTTTTCTATGTTTGTGTTTT
AGACAATCATTATGTACAAAGAATATAGGTGTTAATTACATTGGAGATTATTTTGATGAT
ATGGAGTTACTACACGAATTTATTTTATTTTAGTGATGAAAATTAGTTTTGTTGTAAATG
TAAGTTCTTTTTGAACGGCTGTGAGAACCCATCAAAGGCCAACGATTTTTAAAGGTTTTT
TCTTAGTTTCTTGTTTAGGTATTTGTATTTTTATTATATAAGTATAAATCTTAGTGTGTA
TGTGCTAATTAGTTACAGCTAAACAGTTTTGCGTTATATTATGATTTTAATGTTCTATAA
TCACTCATAATTTTGTATTAGAAAAAAAATGTTGAAATTCTATTATGATGAGGGTAACAA
CTGAAATTATATTTGGGAATAATGAGATAGAACTGATCCGATTATTTCTCGTTGAGATCC
AATGATATGATTACAAAAGTGATATGACAATTTCATTTAGTTATTCATTACAAAGTTTCC
TACATAATCGCCATATTTTTGAAATAATTATTGATTAAGTTTGTGAAGAGTGTTAATATT
AATATGTATGTATCATAGAAACATAAGATTATTTTATTATAAAAATATGGAGATGTCAAC
TAAATTTACTAAAAAAGGGGAAATAATTGTATTTGGTGAAGACATCGCCTTATGAGAAGG
AGTCTCTTTTATCACTGCCTACAAAAGTATTTTTAAAAACAATTTTATTTTAATTTGTCT
AAAATGTTCGTGTTGCTTTATGTTTCTATGATGCAAATTAGTGTGATAGTGTATATAATT
AGTAAGTAATTTGAATTTTGCTATATACCATATTGAAATTTGTATGACAATTACCCAATT
AATTAAAACAATTATTATTCAAAAAAAAAAA
(2251 bp)

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