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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR12217c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protein_SMG5_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031625 F ubiquitin protein ligase binding
GO:0032204 P regulation of telomere maintenance
GO:0032210 P regulation of telomere maintenance via telomerase
GO:0035303 P regulation of dephosphorylation
GO:0042162 F telomeric DNA binding
GO:0042826 F histone deacetylase binding
GO:0051721 F protein phosphatase 2A binding
GO:0070182 F DNA polymerase binding
Transcript
Level		FPKM:13.85 TPM:13.57
ORF EntryO_TrvaFAMAMG15465_complete:A_TrvaFAMAMG_TR12217c0_g2_i1
Sequence
(Nucleotide)
GGCGAATCGTCAATGGACGGGAGCCATAAATAAAAGAAGAAGAAGAGAGATTTGACAGTT
TTGTCACCACGGCGTAATTTCCTGAACTCTGAATAATTCTGAAAAGTAGATTATTTTTAT
GCTGGAAAAATGGTATCAAAATGTCCATTGGTCTTCGATATACTATAATATGAAATTGAA
ACTCAGTATAAAAATATTTTTGACATGATAGTAAAATGACTTGAAAATGAAGAACGGATG
TCTCGATATTTCTGAGGCTAAAATTGCAGAGCGCAATGAACGTGCCAAGAAACTTTATCG
ATATATAAGCGACGTAGCGAGACGTATCAACGAGATGTCGTTAGCAACCAAAACTGTACC
TGACCTCTTTACAATAAACATCGAAGTTCAAAGGCAGAAGTTAAGAGATAATTGTGAGAA
GTTGCTGTTTCTAGATCCAATCAACTATGGCAAGAAAGCCCTTGAATTGTTGTGGAGAAA
AGTGTACTATGATACTATATCAAGTGCTAAAAAGTTAAGGAACAACAGTGAGCATGATCA
TTTCCTGTTCACACTTATTCAATGTGGTATTGGTAATTTTCATCATTTTATAGATAGGAT
CTATTATGAAATGAAAGTAGATTATAAAGAACTGGATTACATGCCCAATGCAGGGGAAGA
TGAACCACCTCAAGTGATTAATAGTGAAGTGTCAGATTTTGGCAAATCTGCTCTACACTC
ATGTCTAATCTACTTAGGAGATTTGAGTCGTTATGCAGTTGAAATATCACCAAATTTTGA
GACAACAATTGCTGCTCGGTACTATTTACAAGCAGCACACACTGACTTTACATTGGGAAT
GCCGTACAATCAATTGGGGAATCTGTACTTGGAGAAAAACTATAATTTGGATTCTGCTTG
TTTTTACATACATTGTCTGAATTGTGAAAACCCATTTGAAGGAGCCATGGGTAACTTAAC
CAAAATATTTGAAAAGAATGAACAATTCTATCCCACTGCAAATGAATCTGATACCTTAAG
TCAGGTAGAACATATACAGAATACAATTGTAGAATTCTTATCATTAATTGAAATATGGTA
TTTGAACAAATCTGATCCAGCCATTCCTCAGCGCTGTAGTAAAATTACCCAACAATTAAA
GATTTGCATGGATTTCAATGAGTCAATCCTTCCAGATGTCAATAAAAACTATGATGATTA
CTTATCAATTTTAGAGCAAGAAACCACTGCCCCTTCTTACTTAAATTCTAATATTATACA
TCAAATGGTTCTGATATGCCTATTCACTGTCTCCAAAATGAGTGAAATAGATGAGACTCA
AGCCTTTGCATGCAAAGCATTCACTCTTGCTCTGTTATCTCAACTTCTGTCTAAACTACT
GCACCAGTTAGAATCCATGGGTCTTGTAAACCCAAGTTACATTTATACTAACTACAAAGC
GTCGAAGCTACGAAATGTACATAAAGAACAACCTGAAAACAATAATATAATAACTGAGGA
TATTGTAGATACTACATTAGTGAATGGTGAGAAAAAAGATGTGGAAGAAACCAATGAAAA
TTATGTTAATATCAACAATGAGAAAAATATGAATGGGGATGCCAAACAAAAAAAAGCACC
TGCAAAACGTCGCCGTCGTCGCCGCGTGGCATCTTCTGATAGCTCTGAAGCAAGTGCTGA
CTCTGATAGCAGTGATTTAGATGAAGTTGAAAACACTGACAATGAAGATTTATCTGATTC
ATCATCCCAATCAGAATCACTCAGTGAAGTCAGTGATTGTGATGATAAAGATGATGAACA
AACAGAAATAGATTTGAAAACAGACTCAGATAAGAAAACTAATGGTACTATAGTTATTGC
AAAGAAAGCAGATGTCAATTCACATAATTCAACTAAAGATTTACCAAACAATAATCCAAA
TACTCCAGAATTGAATAAATTAAACACAACAGAATTGAAAATGTTTTTGCAAGGAAATAA
TTTTATGGCAAGCATTAAATTGTTGTTGGATTGGATTTTGCTTGAAAAGGATTTAATTCT
CTCATGTGGAGATAGTGGAGATTCTCTATTTCAATGTGTTGTTGATCTGTTAAATATATT
TTCATTTTATTTCAATACAAAAGCTGATGAAACTAATGAGGAACACAGTCAAGTTATAAC
ATATATCAGAAACTTAGTTATGAAAATGAAAATTGAATATAAAACAATACCTCTACCAGA
AGACATAAATTTACGAGGAACAAATATTTGTAAATTTGATAAAGATGCTGCTGAATGGAA
AATTTTAGAAAAATACAAGTTATCAATTTATGAAGAAAATGTAATCAGAATACTTAATTT
CATAGATTTCGGAAACCAGATCATTAAAATTGTACCCAGAATAAGATACAACAGATTCAT
GAAACTATTTTACCTAAAAAGTATTCACCCTCCTAAGTTAACCACGAAAATCAACCATAA
AAGAAGTAGGGAATGGCACAATTCTAAAAAACATGTTGAATCCAATGAAAGTGGATTACT
GAGGCGTCTGGGTCATCTGTGGTTGACGTCACAAGTCCGTGAATTGGAGCGTAGTGGACA
AACAACAACACCTGCCTTACTTGTACTTGACACAGCAGCCCTCAACAAACATCTCCGACG
CGTCAAGCAGCTCCTGCTAACAACGAATTTCGTGTTAATGGTGCCTACTATTGTATTACA
AGAACTGGACAATCTAAAACGGGAACAAAGTACGGCGCGTAAAGCTATCCGTTGGTTGGA
ACTTCAATTAAAGAATGGGTCACGGTTTCTGAGAGCGCAGCGACCAGGGCAGTCTAAGCC
GTTACCGTTCCTGAAATATCCTCGCAAGGCCCCGGCGCACATCAACAATTTCATACAGAT
CTTGGAATTTTGTAACCATTTCGTTGCGGAGGACAAAAAAACGCAAGGATCTGGTGATGG
CGAAAATCTTTTGCATGGAAAGCCTTCCTCTGTCCTTATACTTCTTGTAGGCAATGGCAA
TGAAGATGAGGAGCAGTATAAAGAATTTAGTATCATGGGCGCCGCGCAGTCTGCTGGTAT
ATCAGTCGAAAACATCGTAGATTTCTACACCAAGTGGCGACAGACATCGCACAAAAACGG
CAAAAAGAGATGAACAAGTCGATCGCGAGATCGGACTGGCTACAATGGAAAGAATAGACA
TCGAGGACCTTCGATATCGGAAAATCATCTGAATCTACTGAGGTTTGATACTGGCGATGC
GTTTGAATATTCGCTATTTGAAAAATTAATGTTGAAGATAACATTATATGTGGAAAAATT
CATATTTCTTATCAACGAAATGTTTATATTCATATACATTATGTATCCATCTCAAATTCA
TAACTCATGTTTTAGATTACTATTGGGAAATGTATTATCATCTTTCATTTCATACGGTAG
GATTAACCTACCTACTGGTTCATTTTATTTCATCTTTGTGTTACACATATAAAATCTTTC
ATTAGAATAAATTCATTTTCATTGAAAAAAA
(3511 bp)

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