SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11983c3_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_potassium/sodium_hyperpolarization-activated_cyclic_nucleotide-gated_channel_2_isoform_X5_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0002027 P regulation of heart rate
GO:0003254 P regulation of membrane depolarization
GO:0005216 F ion channel activity
GO:0005222 F intracellular cAMP-activated cation channel activity
GO:0005244 F voltage-gated ion channel activity
GO:0005248 F voltage-gated sodium channel activity
GO:0005249 F voltage-gated potassium channel activity
GO:0005267 F potassium channel activity
GO:0005272 F sodium channel activity
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0006810 P transport
GO:0006811 P ion transport
GO:0006812 P cation transport
GO:0006813 P potassium ion transport
GO:0006814 P sodium ion transport
GO:0006936 P muscle contraction
GO:0008015 P blood circulation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030552 F cAMP binding
GO:0031226 C intrinsic component of plasma membrane
GO:0034765 P regulation of ion transmembrane transport
GO:0035725 P sodium ion transmembrane transport
GO:0042391 P regulation of membrane potential
GO:0042802 F identical protein binding
GO:0048471 C perinuclear region of cytoplasm
GO:0055085 P transmembrane transport
GO:0055117 P regulation of cardiac muscle contraction
GO:0060078 P regulation of postsynaptic membrane potential
GO:0071320 P cellular response to cAMP
GO:0071321 P cellular response to cGMP
GO:0071805 P potassium ion transmembrane transport
GO:0086015 P SA node cell action potential
GO:0086091 P regulation of heart rate by cardiac conduction
Transcript
Level		FPKM:105.51 TPM:103.38
ORF EntryO_TrvaFAMAMG15118_complete:A_TrvaFAMAMG_TR11983c3_g1_i1
Sequence
(Nucleotide)
AAAGCCTGAATCTTGGTTTGTCTTTGAATTATTGTTTTCAGTAATCACCTGTTAGTGTTT
AGGCAAAAATCTATTAACATTGTAACTAGTCCAACATCATTTTTCCGTTTAATAAACTAC
AACAGCTGTTACAAATGAAATCGGTGTATTTATAAGTCTGGTCATAAGGTAGTAGGAAAA
CCATTTATAAAATATTATGATAATAATTTTCTAACAAAATACTACTCGTAAATAGTAATA
ACAGCCCATAATCAGAACAGAAAACAACTACTACCCACAGCGCACCAAAAGCGTATAAAG
CTATCATCACATAAACAAACGATTATTGACTGAGTAACAGCAGTGATCTGCTTCTGGTTT
CGTCAGTCATTGACATTAATTGGTCTCTGTAATGGAAAAAATATCAGTGCATGGTGTAGT
GCGGGCTTGGCCAGCCGCTCGGCCGGTTCGATGAGTGCGTACAAGCTATTGTGAAGCTCG
CTGTGTGCATTTCTGGGCGTTGGTATCGGGCCCTGCCACCGCCAGCCGGCCCATTCAATG
CTATGTGCGTCGAACAGTCGCGCTCAATTCTCCACCGTAAATCGCCGCCCGCGCCGCTCA
ACTATTGCAAAAATGACATTCTTGGTGCACTAGTTTGAATAAACATTCACCATGTTCTGT
GCAAGGTACACCAGCTATCTGTTCCGTCGTGTTGTCAAATACACATGCGAGCTAGCCGGA
CGCGAAAGCGACGCCGACATGTCGCTGAAGCAGGGCAGCGGCACCGGCAAAGTACACTTC
GGTGGCCTGGACGATGTGTCCTTGTACGGGACGCCAGTGGAACCAGCACCGCCGGCTCCG
GACGCGAAGCAGGGCTTCTTACGGAACCAGTTGCAAGCCCTCTTCCAGCCCACCGATAAC
AAACTAGCAATGAAACTGTTCGGCTCAAAGAAAGCGCTTATGAAGGAACGCATCAGGCAG
AAAGCGGCGGGCCACTGGGTCATCCATCCGTGCAGTAGTTTCAGATTTTACTGGGACTTG
TGTATGCTGTTACTTCTCGTGGCGAATTTGATCATCTTGCCCGTTGCAATCTCCTTCTTC
AACGATGACCTCAGCACGCGCTGGATTGCCTTCAATTGTCTGTCGGACACCATTTTTCTT
ATAGATATCGTCGTTAATTTTAGAACAGGAATAATGCAGCAAGATAATGCAGAGCAAGTA
ATATTAGATCCAAAATTAATAGCGAAACACTATTTGAGGACTTGGTTCTTCCTGGACCTC
ATCTCTAGTATACCACTAGATTATATTTTTTTGATCTTCAATCAGGTAAACGATTTCAGT
GAAAACTTTCAAATTCTCCACGCTGGTCGGGCGCTCAGGATACTCCGGTTAGCGAAGCTT
CTGTCTTTAGTTCGGCTGCTCCGTCTCTCCAGGCTCGTCCGATATGTCTCGCAATGGGAG
GAAGTATATTTTCTCAACATGGCATCCGTATTCATGCGAATATTCAACCTTATCTGCATG
ATGCTGTTGATCGGCCACTGGTCCGGTTGTCTACAGTTCCTCGTTCCTATGCTACAAGGA
TTCCCACCAAACTCTTGGGTTGCTATCAATGAGTTGCAGGAAGCATATTGGTTGGAGCAG
TACTCGTGGGCGTTGTTCAAGGCGATGTCACACATGCTGTGCATCGGTTACGGACGGTTT
CCACCTCAGTCTCTGACGGACATGTGGCTCACGATGCTGTCCATGATATCAGGGGCTACT
TGCTACGCACTGTTCCTAGGTCACGCGACTAACCTCATTCAGAGTCTTGACTCTTCACGC
AGGCAATACCGTGAAAAGAGATTAGACGTGAAACAAGTAGAGGAGTACATGGCGTATAGA
AAATTACCACGTGAGATGAGACAGCGTATCACAGAGTACTTCGAGCACAGATACCAAGGA
AAGTTCTTCGACGAAGAAGTAATTTTGGGTGAATTGAGTGAAAAACTGAGGGAAGACGTC
ATCAATTACAACTGCCGCTCACTCGTAGCTTCAGTGCCATTCTTTGCTAACGCTGACTCC
AACTTCGTGTCTGATGTTGTTACCAAATTACGATATGAAGTTTTTCAACCTGGTGATATT
ATCATAAAAGAAGGAACTATAGGAAACAAAATGTATTTCATTCAAGAAGGTATCGTAGAT
ATAGTGATGGCCAACGGAGAAGTAGCGACCAGTTTATCTGACGGATCGTACTTCGGAGAA
ATTTGTTTGCTAACGAACGCTCGCAGAGTAGCATCCGTCCGCGCCGAGACATATTGCAAC
CTGTTCTCTCTGTCCGTGGACCACTTCAACGCCGTGCTAGACCAATACCCGCTGATGCGA
CGCACGATGGAGAGCGTCGCCGCCGAACGACTGAACAAGATCGGCAAGAACCCGAACCTA
GTGGCGCACCGGGAAGACGACACGACGTCGGAAGGGAACACGATCAATGCGGTGGTGAAC
GCGCTGGCAGCCGAGGCGGAGCACGTGAGCTTGTCGGACGACAGCGTGGCGCGGCTCTCG
GAGCGCTCGCTGGGCCTGGCGCTGCAGCCGCTGCAGGCCGCGTCGTGCCGCATGGCGGGC
GTGGCGCTGCCGGGGCTGGGCGTGGCGGCGGCGCTGCCTCGTCCCAAGTCGGAGCACGAC
TTCAGCTCGGCGCAGAGCCAGCCGCAGCCGCTGTCGTCGGTGGGCGCCGCCTTCCACAAG
TCGGACGCGGGCATCGCTCCCTGACGCCGCACGCTCTGCTAGGCCCGACGACGCGCGACG
CTAGCCGTAGTGCGAGGGGCGAGGGCCGCTCGCTAGTTGTAGCGTAGACTCGACTCTTGT
AGCAGCTGCGACTTCGCCGGCCGCCCGTGACCGCGTGACGCCCCTTGAATCTCATTTTGT
GATCTTATACTTAATTCTCCTGTGTTATAATTTAGGTTAAATTTTATATCATTGACGCTG
TGAGGAATCGGATATACGTGACGTATTCCGATTGTATAGATATAAATACCTGTTATGTAT
TGAATGAAAAACGATTACTATTAAATCTTTATAGAGAGATCTTTATAGATACCTTGCCAT
TATTAAAAAGGAAATAATGTTATAGACTAGACTGAAATTTAATAATATCAATATTTACGC
TTTTTTTAACGTACGAAATAGATCTTTATTGTTGATGCGGGGTATTCGATGGCGATACGG
TGGTATGTAAGTGCGTAGTAATAAATTAACGTGCCTCAATATCACAGTTCCGAAACTATT
TATTGTTTCACTTTCTTCCGTTCCATAATTTTATAATTAATGTCATAATTTACAGCAATG
TATTGGATCGTAACGGAGTACGTGGAGAGTGTGACGCGTGTGGCGCATTGTAAATCAACG
TTTTTAAAATTTAGATTACTTCTTTTGTAGATAATCCCATATTAAACCGAATCTTTTACC
CTATAGTAGGTACATAAATTACAACGAAAACCTCCTAGTTCCAAGTAATGAATATCGCCA
CACTTAAGTTGCACACTCATGTATGAAGTGCACAAGTGACGCACAAATGAAGTCTCACAT
ACGATTCAGATAGCACACGTTGCTTCGTTTTACTTTAGTTTTAAGTAGTCATATTATTAA
TTACTCATAATTAGCGCAAGCAATAAACATCTCGGTTTCCTAAGTAGAGGTGATATAGTA
GAGCTTCGAAGTTTTCGAGAGTTGTTTCTGATGTAAATATTTTATTGTGAGGTTTGCGCG
TTTATGCGGTTCGATAACGTTCGTAAGTCTAGGGGCGTTCGTTCGAGCGGTTCAGTCAAT
TAATCCGTGCTCTCCTGCGGCGTGAGGCGGACGTCTCGATGCACCACTACACCTTCATAC
TTTCATTTTAATTGTAGGCGAAAATAATTTATTGTCGATAGTGATCATTTTGTAGAAATA
AGTAGGCCGATCGTTAACAAATTCGGACGAATTACGTTATGTGATAGAGGGAATGCTGCA
GCCGTGGATTCAACGGCCGCCTACTCCGCGACCAGTGTTAGTGTAGCCCGAATCAGCTCG
ATGCATGCTTCAGATCCTGTAGGCCTAGTACCTCTCCTAAGAGTGCATAATGTACTCCGC
AAGTGGGATGGGCAGTATGAATGTCAAATAAACTACTTCCTTTGAACTCATATTGCTAAA
CTCTCCTATTTTGGGTATTCGAATTGTGCACTCGGACTAGGCCTAGTAATTTACTTTACC
GACAACTAATTCTATTGCTTATAGAAAGGGCTTGCCTGTATTCACGTAACTGTAGATGTA
ATTAGGTGATTTATTGTAACGAGCGACATATCCTAGCGAAGCTCTGTAATAGATAGTGGT
CGCGGAGCCGACGGCCGTGGGCCTCGGAATGCGATACCAACACGAATCACCGTTGACTAA
TTCTTAGTGTCATGACAATTTGTAAAAATGGTTTTGCAAATGTTAAATTTTAGCCAAAAT
ATAGTTAATGAATGAAGAACCAATATGCAGTAGCTTACTTTGTAGATGAACGCAGCCTAG
TTCTGTTCGAAAACTAACACCAATAGATACTTTATATTCTTAAGAAATTTATATACATTG
ATCATAGCAGAAACTGTCAATTTATCTACAAAACTGAATACCTATATAATATTATATAAT
ATTATTTCATTCCCAGGTGCATTTATTTATTGTTATTTTATCAATATAACATTAATGCTT
TTATAAATTATATAAATTTTATAGAAGAGATCTATTTTTGATTGTGAAGTTGAACTAATG
ATTATAAGAAAGAGAATCTATTACTATATCAAAAAAGAGTTTTAATTTATAAATGTTGTT
TGTTGATGATTTAAATAATTTCTGGTATCTATTTTCACCAAAAGTGCTCATCGCTGTAAA
GAATTTAGAGAAAATGCATTAAAAGAATGAAGAGGAAAAAAAAAAAAAAAAAAAAAAA
(4918 bp)

- SilkBase 1999-2023 -