SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11951c0_g1_i5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_PDZ_and_LIM_domain_protein_Zasp-like_isoform_X2_[Papilio_polytes]
Ontology
GO:0001725 C stress fiber
GO:0001952 P regulation of cell-matrix adhesion
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005915 C zonula adherens
GO:0005925 C focal adhesion
GO:0005927 C muscle tendon junction
GO:0008270 F zinc ion binding
GO:0015629 C actin cytoskeleton
GO:0016323 C basolateral plasma membrane
GO:0030018 C Z disc
GO:0030239 P myofibril assembly
GO:0031252 C cell leading edge
GO:0045177 C apical part of cell
GO:0045178 C basal part of cell
GO:0046872 F metal ion binding
GO:0051371 F muscle alpha-actinin binding
GO:0061061 P muscle structure development
Transcript
Level		FPKM:12.52 TPM:12.27
ORF EntryO_TrvaFAMAMG15015_complete:A_TrvaFAMAMG_TR11951c0_g1_i5
Sequence
(Nucleotide)
GTTCATTCGTGGGCTGGAAGCCGCCGGTATCAGTGATCGCTTCATTTGTTTCAGCGTCTG
TCTGTCACTGTTCGTGAACTACAGTTAAAGTTCAAGGTCTTCGAAAAGTGTTTCGCATCA
GATTGCAGGTGAGTCGAGTTGTGTGTGGTGTGGGCGGGCGGCGACCGACCGCTTCAGTTT
GAGACAGGCAACGACGCCGCTCGCACGAACCTCGCCGCACAAGCGTTAAACGAACGACCT
AGAGATGGCCACCGGCCCGAAGATAGTGCACAAGCAGTTCAACTCGCCCATCGGGTTATA
CTCGCAGCAGAATATCCAGGAAACGCTCAACAAACACATGACGAATCTCGACAATGGTTC
TGTTGGTATTGACTTCAACGACCGCGCCACGGACAAGCCAGCAAACCTGGCCAACTCAGC
TGTCCTTAGAATGTTAGAAGAAGAAGAGCGTAACCGCAAAGGATACAGTCAAAAGAAAGT
TGTGTGGCCTCCAGTGCCCGAAACGAACGGATATCATCAAACACAACAGCTACCGGGATC
TCAGCCGAACTACGCACAGCAGCCTTCCCCTCAGTCCCAGTACTCATCGCAGTCTCCCTA
CTCGGAGCCTGCTTACCAGACTCAGCAGAAACAGTTCGAGCCCCCTCCATCCACCATCAC
CCTTCGCCCGCAGCCACCGATCCACCAGAAACCATCCCCGGTGTTCGTCAGTCAACCCGC
TGCGGCAACGTTTAAAGGAGGCGTCAACATGCGTGGAGACCAGAAATGGCCACCTCAATC
GGTGAAGGAAGCAGTGGCTGCAGAAAACGAGGCCCGCGTTAAACTGGCGAAGGGCCCCGC
TTGCAGACCGCGCAAGGTACACAAGGACTACAGTTCGTTCTTCGCGAAGAATGCTTTGAG
CCACAATTACCCCGGCTACCGTGTGCCGCCCGGCACCCAGCACTACGAAGACTACTCTGG
CAGATCCTCATATTAGATCATCAATTTTAACTAACAATCTCGTTAGACCTCAACCGTGTT
TCACATTCAAATCAACGGACCTGATTTTGTTGACATTGGATCAAACGTGTCTATTTACAA
ATCGTGGGTAAAACATTGCCAACAAAAAGGGTTCCCTCTCATTAATAAACATCATCACAT
TTCGAGGTATCGCCGGTTGAAACCCGGTAGCAGAGGTACTTGTATAGACTTTAATGTATA
AAGTCTTGAGGCATGTACAACGACGTAAAATGTAGTTTTAATTTAATTTATTTTAACCAT
TAATTAGCTCGTAAGTCATTATTACAGTCATTAAATATAACAAAAATATTATTATATATC
TCTTAAATCATTTCACTACATCACTTTTTATCATAGTTTCAACACGCTAAACATATATTA
TGTTAGTTTTCGAAGTTAATGTGCGGCTTTTCAATTTGAACACGATTTAGCTTTTTAATG
TATATAATGCTCAAAATTTCTAAAAATAAAATAAAAAATACATTGACATATTAATTTATA
ATGACTGAAGTCGAATTGCGAAATTTTGTACTTATTATACGCTTCTGCAATGTAATATTA
ACGTTTTGTCATTATTGGCTTAACCGTTTACCTAGTCATGCGAAAAATTAATACGCGATT
ATTTTGTATATAAAAAGTTAAAATATGAATTTTTGGTATTTTTATATTGTAATTATGTAA
TAAATTGTATGAAATACCAAAAAAAAA
(1707 bp)

- SilkBase 1999-2023 -