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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11788c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		homeobox_protein_homothorax-like_[Bombyx_mori]
Ontology
GO:0000060 P obsolete protein import into nucleus, translocation
GO:0001654 P eye development
GO:0001752 P compound eye photoreceptor fate commitment
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007275 P multicellular organism development
GO:0007380 P specification of segmental identity, head
GO:0007383 P specification of segmental identity, antennal segment
GO:0007420 P brain development
GO:0007422 P peripheral nervous system development
GO:0007432 P salivary gland boundary specification
GO:0007476 P imaginal disc-derived wing morphogenesis
GO:0007479 P leg disc proximal/distal pattern formation
GO:0007480 P imaginal disc-derived leg morphogenesis
GO:0007525 P somatic muscle development
GO:0008134 F transcription factor binding
GO:0009954 P proximal/distal pattern formation
GO:0010092 P specification of animal organ identity
GO:0034504 P protein localization to nucleus
GO:0035282 P segmentation
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0042659 P regulation of cell fate specification
GO:0045664 P regulation of neuron differentiation
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048735 P haltere morphogenesis
GO:0048749 P compound eye development
GO:0060323 P head morphogenesis
GO:0090098 P positive regulation of BMP signaling pathway
Transcript
Level		FPKM:11.62 TPM:11.39
ORF EntryO_TrvaFAMAMG14642_complete:A_TrvaFAMAMG_TR11788c0_g2_i1
Sequence
(Nucleotide)
GCCGAGCGCGCCGGGCCTCCCGCTACCCCGCGCCTCGCTCGGCCTCGCCGCGACACATCG
CAACTCCACAAGTCTCGTCCGCCGCGAGTGCACTATGACACTAGTGACCTAGCGGGCTCC
TGTGACAGTGTCTATTATTTATGTGTTTGTGTGCACGTGCCTGTGTCGTGTCTTAGGTTG
GGCCCGTGACCGAAAACGTTCGTGGTGGCCAGCGGAGCCTTGCACCCGGTCTCGGGCCGA
GCTTTCATGGCTCAGCCTAGGTACGACGAGAGCCTTCACGGCGGGGGCTACATGGAAGGG
GGCGCGATGTACCACGAGCACAGACTGACGCACCCGCACCTCGCGCCGGTCCACTACCCC
CCGCCGGCCGCGCCGGCACACGCGTTGCCCGGCGAGCCACTCGTTCACAAGAGAGACAAG
GACGCTATTTATGGGCACCCCCTGTTCCCCCTGCTGGCTCTGATCTTCGAGAAGTGTGAG
CTGGCTACCTGCACGCCCAGGGACCCTGGCGTGGCGGGGGGAGACGTCTGCTCCTCGGAG
TCCTTCAACGAAGACATAGCTGTCTTCAGCAAACAGATACGTCAAGAGAAACCATATTAC
ATAGCGGACCCGGAGGTCGACTCATTAATGGTTCAAGCGATACAAGTACTACGGTTTCAC
CTCTTAGAATTAGAAAAAGTCCACGAGTTATGCGACAACTTCTGTCACCGCTACATCAGC
TGTCTGAAGGGCAAGATGCCGATCGACCTGGTGATCGACGAGCGGGAGACGGCCCGGCCG
CCCGACGCGAACGGCGAGCCCCGCTCCGCGCCCGACAGCAGCCATGACGGAGCCTCCACG
CCCGACGTCGTATCAGGATCTGAATACTGGAGACCTCCTTCATCATCGCTGTCGTACGGC
GGCGCTGTGAACGACGACGTTCGATCCCCTGGCTCCGGTGGAACTCCTGGACCCCTCAGC
CAGCCACCACCACAGACCCTCGACGCCACAGATCCAGATGCGATGGGCAAATGGTGTCCA
TCGCGACGTGAATGGTCCTCCCCGCCGGACGTGGCGCGAAGAGTCTACTCCTCCGTGTTC
CTGGGCAGCCCCGGTGAGTACCCAGGTGACGCGAGTAATGCCAGTATCGGGTCCGGGGAA
GGGACGGGGGAGGAAGATGACGACACGAACGGCAAGAAGAACCAGAAGAAACGCGGCATC
TTCCCGAAGGTAGCCACCAACATCCTGAGGGCGTGGCTCTTCCAGCATTTAACGCATCCC
TACCCTTCTGAAGACCAGAAGAAACAATTAGCACAGGACACAGGGTTAACGATACTACAA
GTAAATAATTGGTTCATAAACGCCAGACGTAGGATAGTGCAGCCAATGATCGACCAGTCA
AATAGAGCAGTGTTCCCCCACGCCGGTCCCAGCGGCGCCTACAGTCCTGAAGCGACGATG
GGCTACATGATGGACGGGCAGCAGATGATGCACAGGCCACCAACGGACCCAGCCTTCCAC
CAGGGCTACGCGCATTATCCTGCGGAGTACTACGGCCATCATCTTTAATGCTGATAGCAT
TTTTGTACATATATGAATACAAGTGACACCGTTAGACCTTCGAAGGTAGCGGAGGTCACC
AACACGAACGCGACATATAACCGCGCGCGACATCAGCGCGGCAGCGACGCGGCAACTGCG
CGGCATCGACGCGGCGACGACGCGGCACAACAGGAGAACTATGCTAAATGTAAATAAAAT
ATAAAATAACGTAACGCGAAACATTTTGTAATATTTGAAACGGTATACGATCTCCTATGT
TAAGATAAAGTCAACTAAAAATATAAAAAAACTTTGTAAATGTAAAAGTGACATGGACGC
TAAAGGTGCGGTTACACCATACGAGTTGACGTAACAATAATGTGGTTTGATAGTTATCTT
ATATATATTTATAGCTAAATGTGTATTGTTATTACGTAAATATAAATAAATAATTGCTTA
GTTGTAAGTTGTAACTATCACAGGAAGCGGATGTCGGCAGACGTTTTATTTTCGTTTACG
ATTTGTAGGTATTATTTTCGAAAATGACGCTCGTCTGCGCGGTTGATTGCAGGTCAGTCG
GTCGTCAGTCGAGATTGACGTCAGTCTCGACTGACGACTGTCCGCGTCGACGAGCCGATC
TTAAATTTCCAAGAGTGTTGCATCTCTTCTAATCACGTAACTCATGATTTTTCTAGCTCA
AATCGTCAATTTAAAAAATTACATTCAGTAATACGTTTTTCTTTCTCACACATAAAATAC
ATATCTTTGAATTTTATATATTTATTGTATATGTAAAAATGAATATTATATGTGGAAAAT
ATCATTGATTTTTCACGTTTTGCCTTTATGTACTATACTATAGCACAATTGTAACCAATG
TATACGAACACAAATGTATTTTACAATGTTATTGAAAGATTTTTAGGTATATTTTTCGTC
TTAAAGATTATACCGTTGTATTGCCTTCTATGTTACCAGGATCGAGAAAATACAGATTAA
AAATATTTAAAAAAAATGTCAGTTAAGTTTGATGTGAAATGACCTATAATACCTCAACTG
GGATCGGCAACCAAATTGGTTTGTTTACTTTTGCCAAGTCTG
(2622 bp)

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