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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11740c0_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_synoviolin_[Amyelois_transitella]
Ontology
GO:0000209 P protein polyubiquitination
GO:0000836 C Hrd1p ubiquitin ligase complex
GO:0005783 C endoplasmic reticulum
GO:0005789 C endoplasmic reticulum membrane
GO:0008270 F zinc ion binding
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0018279 P protein N-linked glycosylation via asparagine
GO:0030433 P ubiquitin-dependent ERAD pathway
GO:0030968 P endoplasmic reticulum unfolded protein response
GO:0036513 C Derlin-1 retrotranslocation complex
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0044322 C endoplasmic reticulum quality control compartment
GO:0046872 F metal ion binding
GO:0051082 F unfolded protein binding
GO:0061630 F ubiquitin protein ligase activity
GO:1904264 F ubiquitin protein ligase activity
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:8.22 TPM:8.05
ORF EntryO_TrvaFAMAMG14483_complete:A_TrvaFAMAMG_TR11740c0_g1_i4
Sequence
(Nucleotide)
TTGCAACTAAAATCGATAGGATCGATCTGTCATTTTTTCTAGCCATCGCCCATCCCGTTT
TTAAATTTCAATATTGTCAAATGTCAATCTTTCAAAACTAAGTCAAAATTGTAGGTTAGA
TTTGGAAGTGTTGGGAAGTTAAAAATACTGTGTTGCAGAAAAAAACAATACTACAAAATA
TTCATAAAATTCACGTACTAAAAAAGTTCACATAATAGTTTAAAATGAAGTTGACACAAG
TTTTAAAAAGGCAGCACCTTGACTTTATGTTCAAAAGACATTGGATAATTCAAGGCAAAA
GGGTTCCCATAAACACTGGTATTGAAAGTAAACTAAAAAAAATGGGTATTGAAGTTGAAG
ATGCACTTGAATTCATAAAAGAAAAACACGAAAGACCAAGAGTGGATATTGTAGGTCCTT
ATGAGTTAGAAAAACCTTTGGATGAGAACCATCCAGATTACAAGGACAGACCATGTTTCA
CATTGAAATGTGACAATGTACTTCTGGAAGGTTTATCTCAAGCACAAGTCCTCACTAAAA
CTATTATTGCGGAAGATACACTTCCTCCCAAAATTGAGGAATTAGCACAGCTGCCTGCTC
CTGTGTCTATTCATGAAAATGTAAAGAAAGCTATTCTGTCAGCTAATGTCTTTGATAGTG
AGCAACAAAAAATAGCTAAGATCAAAGATGAAAAAAGACCTGCTTTCAACTTCCCTAGAA
TATTAGGTATCACAGACAGACGCAGGAATGAAATTTTAACAAATAAACTACTACAAATAG
TAGAAAAGACCAGTGACTCCGAAGTGACTCAATCCAAGTTTGTTGTAAATGATGTTGAGT
GTTCAACAATATTCAATAAAGAGGATGACCTGCTGCAGTTTCAAGATATATCAAACATTC
TAGTCACCAGCAACAAGCCCGTAAAACATGATGTTGAGAAGGACATACCTTTTGTTGAAA
TACCAAACTTGTATCCTGTGAAGCATACCATCACTATGCCACCTGAACATTTCTACAGTG
ATACCAGCAAATACCCTATCAAAAATAAAGTACAAGTTAAACATCCTCACACAACCTGGT
TACATTACAACAGACCTGAAGTGAGCAATATATATGAAACACCAGTCACGCAGAACCAAA
TACTAGGGCGATCTCTAACCCACGCATTCAATGTGGCTGCAGCTTACGCAAAGCAATTAC
ATGGGGAGGATGCAAAAGATCTACCAGAACCAGTATTTGTTAATTGTATTCAAACAGATG
GCAAATTATACCATTTTGGGGTATTGCAATTGAACACATTGAATGTTGATGGTAATGAAG
GTACAAAAAATGTATGGTACTGCAAAAACAACATAAAACTGTATGACTCAAGCAGATACT
TTGGAGGAATGCCAGTTCTCGAAAACTATAACAACAAAGTTTATGGATATATCAATGCAT
TATATAATAGTTAATTTAATTGTAAATAGACTGTAGCTTAATAAAAATAGTACATAGTTT
TAATTTGATTTATTTTGGCAAAAGCATTGGTAGGGTTGGCAAGGAAAATATTGTATGTTG
TATTTATGTATTCATTATATTTACATAACATAAATACGACTCCATTATCATAACCGATCA
AGAATACACAATGCTTACACAATATCAAGACACTTTGTACATAAATAATATTATAATGAA
TATTCCCAAACACAAAATGATACAAAACATAACTCATTTATCCAAAGAAAACTTTTGCAG
TCGACGTCTTCTCAACTCTGCAGTGTCATCGTCAGTCTTCACTCTATCGGAATCAGTAGT
GTCAGGCAAATCGTCAGATTTGATCTCAGGTTGGCTGGTCGAAGGAACTGGAGACGGAGA
TTTAAACTGAGATGTACTCGGGACTGCATCAACCTCCGTTTTAACCTTCACTTCAGGTGC
CAGATCAGTTTGCGTTTCGGTTTGTGTTGCCACAGTAACATTGTTCTGAGCAGTATTCGC
GATGGCCGTGGAATATTGTTGCATAAGAAGCACAGAAGCGTCCAACATTGCCTGAGCCTC
GCGAAGTAACTGTAATCTAGCTTCAATGTTCCTTCGTTCGTTGCCTTCCATTCTCTGCAG
CTCGGCCGTGGTCAGCACGGCGAGGTTTGCAGGACGAGGCGGCGGTGGCGGCGGCCATGC
CATTAGGGGTGGCGGCGGCGGCATGTTGGGGAATGGCGGCGGAGCGGGCGCGGCGGCGGG
TGCCGGTGCGGGCGCGGCGTCCGGCGTGCGCGGCGCTCCTCCCGCCTCCGGGGCGCGCAG
CACGTTCAGACGACACGTGGGACACGTCTGTTGTCGCTGGAACCACAGCCGCAAACAGGC
CGCGTGGAATATGTGGTTGCACGGCAACTTCTTCGCACCTGAATGCATTTCCTCTCGGCA
GATGATACATTCATTGTCGGCAGCTTCGAGCTCCGCCTGTGTAGCATCAGGATAGAGGGT
GTTCATATTACGAATCGCCCTTCGAGACAACACCACGTCATTGTATGCTTTCTTGAAACT
CCTCATAGCTTCATACATAGGTCGGAATGCAAACAGTGGTAATGTATAAATGCGGACCAT
AACTGCTACAAATCCAATATACAAGAGGACTTTCAGGAAGTTGATAGCAAGCTCCGTGTA
TAGCAGAACTGCAGCTTTGCTCTCCCATGGCGCTTCCCATCGAGAGTCAATGGCATGAAG
GAGATACTTTATGAGTATATTGGCTATCATAATGATGAGTATGCTGTACTCAAAACCAAA
CACAAGTTGAACTGAGGGTCCTTTTGATGTAGTGACGTGATATGCATGATGGATGAAGTA
GAAGTCAGCATGTGCTAACAACATCAACAAGCTTAGTATTCTTATATGGAACACCCATCC
AATAACAGGACTTCTCTCCATATAGTCAACTCTGTCTTCGGCCAACCAGTGGAATGCTTT
GAGGAACAGTAACAGAGTAAAGAGTGCAATGAACTTTGGATTAAAATCATCCCTGAACAC
AGTAAACGCTAAACACGTCTCCGTAATGGCATACCAAGACCTCTCTATTAAATGCTCAAA
TTCAGCCGGGCGAAGTTGACCAAAGAATATTTTCCTTAGCATTTTCCCCACCAATAAAAC
TAATATAAACGCCTGCAGATACATGACTGCCATACTTGGGTTTGAATTTGTTAAATAAAC
TATCGAAGGATAAAATTGTTTCTTATGGTAATATGCATTGCCGATAACCACGGTGGTGAG
TGCGAGACTGATCACCGTTGCTAACACTGCCTTCATTTTGATAGTATTTTGGAACTCCTT
CAAAATAGAATCTTCATGAGATCTAATTTATTAATTTCTAAACACTCCAAATACATGGAT
TGTTTCTAAAAACATTTTCAAAACATCATCTCTTAGCAATTCGAAAAAATATTTTGAGTT
TTG
(3423 bp)

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