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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11486c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_U5_small_nuclear_ribonucleoprotein_40_kDa_protein_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000375 P RNA splicing, via transesterification reactions
GO:0000398 P mRNA splicing, via spliceosome
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005682 C U5 snRNP
GO:0005732 C sno(s)RNA-containing ribonucleoprotein complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0044822 F RNA binding
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:7.08 TPM:6.93
ORF EntryO_TrvaFAMAMG14355_complete:A_TrvaFAMAMG_TR11486c0_g1_i1
Sequence
(Nucleotide)
GAACGAAGTCCCCAGTTTCGCCATCTAGCTAATAGTGACGTTCCCAGTTGAGTGGTTAAA
TATGGGAATAATTAATCATGAATACCATACAAGGATTTTAATTGTATAAAAAAATTCTAG
AATAAAACACACTATACTTATCAATAAACTATATTTCTATGTTAAGTTTAAGATGTACAA
AAGCTTAAGTTTAACTCTCGTTTAGTATTTATTCACAGAATGTTGCATAAGAATTAAGCA
TTATCTTCTTAAATTATTTAATGAATAAAGTTGATGATAAAATCGTAAAACTGATTTCAT
ATTTTTTTACCCTTTGCAGTTCGTTTGCGAGTTTAATTAATCAGCTAACCACAGTTTCCA
TGGTTAAATTGTATTTAAAATGAAGAAGAAACCTATAACCTACGGATTAAGATGAACTGT
CATATTATTTTGGACGTAACTTGCAGATTTTGTGAACAGAAGGCTCCATCTTCACCTGCT
CTGTGATTGTCCTGATAGCATTAGATCCTCGAGGGACACATACTATCCCCAAAATGAGGC
TATGGTGACTTTCTTTTCAATAATAATAATGTACGGAATTTTCCATACAAAACCACATCC
TATTATTGTTCATTCAAACTTTTGATAACTCATTTTGCTTATTATACTATTCACAATTAC
AGTCTTTAATTTTCAATTTCTCCTAAATAGATTTGTTTATCACTAGAAGCTGATAGCACT
ATGGGCTCAGTTGGATGGAAGTCCACATCATTCACTGAACCAATATGACCTGGCAATTTA
TACAGAACTCTTCTCGATGTTGTGTCCCAAACATATAGGAATCTATCTGATGATCCTGCG
GAGACCTTAGACCCGTCTTGCGACCACGCACACCTGAGTAGATTCTTTTCGAAGTTGTGT
TGGTGTCCGGACATCAGTTTGACGCATCGTTCCGAGGGAGCGAACGGTCGCACGTCCCAG
ATACGAAGCGTGCTGTCCATTGAGTTGGACAGGAGGTATGCGCCGTCCGATGATAATGAC
AAACCTGTAACGGTATCTGTGTGTCCTTTAATTTTATAAGCAATCTGTTTATTTCTGATA
TCCCAGATTTTGATGACATTATCGAGACCTCCGGAGATGATTTTCTCGGCAGTATCATTG
AATAGAACACTTGTGACTGGGTAAGAACTGTCGAATGAAGCTATTGGGTTCCGTTTCCTG
GCATCCCATAATTTTATTGTGTTGTCATCTGATGCTGACACTAAGAGCTCTGGTCCACGT
CTTGCGCCTGAAACAGAGTTAACGAAACTCGCATGTCCCTTCAGCTTCTTAATCCTAGTT
CCAGTAGGTACGTCCCACACCGCCACCGTGTTGTCCGTTGCTCCTGTGTACAGATGCGAG
CCGTCTGGAGAGAAGCAGAGCTGCATGATCGCACCGGTGTGACCCTTCATCACCATCACA
TTCTCGCATTGACCGTATACATTCCATATTAAAATCTGTCTGTCGAATCCGGCTGAAGCC
AAATGTTTTCCTTCAGGATGAAATTTAGCTGAGAATATTTCCCCTTGGTGGCCTTCCAGT
AACATTATTGGAGCATATAAATTTGATGTTCTTGGGACAGATGAAGTAACAACGGCTTTT
TCTCTAGTACCGACCACCGAGATTTCATGTCGTGTTCGTTTGGACGGCACAAGGGCCACT
TCGTCCGCTTTCCTTTTCATTTCAATATCAGGCATCTTGTTAAATTAATAAATTGTTTTC
GGAACACAAACACTGAAAACACAAAACCTAACCTCAAAATTTGTGTTTGTTGGTTATGTC
AAAAAAGTCAATTGTTA
(1817 bp)

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