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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11462c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_histone_lysine_demethylase_PHF8-like_isoform_X2_[Bombyx_mori]
Ontology
GO:0000082 P G1/S transition of mitotic cell cycle
GO:0003682 F chromatin binding
GO:0005506 F iron ion binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007049 P cell cycle
GO:0007420 P brain development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0016706 F 2-oxoglutarate-dependent dioxygenase activity
GO:0031965 C nuclear membrane
GO:0032452 F histone demethylase activity
GO:0032454 F histone H3-methyl-lysine-9 demethylase activity
GO:0033169 P histone H3-K9 demethylation
GO:0035064 F methylated histone binding
GO:0035574 P histone H4-K20 demethylation
GO:0035575 F histone H4-methyl-lysine-20 demethylase activity
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045943 P positive regulation of transcription by RNA polymerase I
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0061188 P negative regulation of ribosomal DNA heterochromatin assembly
GO:0070544 P histone H3-K36 demethylation
GO:0071557 P histone H3-K27 demethylation
GO:0071558 F histone H3-tri/di-methyl-lysine-27 demethylase activity
Transcript
Level		FPKM:4.81 TPM:4.71
ORF EntryO_TrvaFAMAMG14316_complete:A_TrvaFAMAMG_TR11462c0_g2_i1
Sequence
(Nucleotide)
TCTCTCGCTCTTTCGCCCGTATACCGACTTTACAGGCAACCAATTTTTTTTTAATAAAAA
TTTATTGTACGAATTTTTTTGTCAAATATAAATTTATCAATAATTATAGAGAAAAAAAAA
ACAATAATTAGTCAAAGACATCGTATCTAAATAATAAAATATAATTTAATATATCATTTT
GTGTATTTTAAGGATTTTTCCGAGCCGTTGTTTGGCCGTTTTCATGCCTTTTTTCAGTCT
TATATTTTTGTTATTTGGCGTGTTGTGTACGGGAGGTGGCGGTCGTTTGCTTTTCGTCGC
TAACACCGCTCTCTTCGCGTTCTGTATGAGGTCGTCCCTGGCGGCGGCGTGGTGCAGCGC
GGCCCGCACGCACTCGCGCCGCACGCCCGCGCGCGCCGGCCCGCGCAGGCGAGGCACCAG
GCGACCCAGCCGAGCGCGCGGTGACCACGCCTCGTCCTTTTCAGCTTTAGATTTGTCCAT
TTTCCTCGGATTCCTCCGCCGTCGAGATATGGACCAGTCGTCATCTTCATCTGAACTCAT
CTCTAACGATGGATATACATATTCCTCGTCTCGATGCACCTCCTTGATGATATCCTGTTC
ATCATGAGCCTCGTCTTCGGACAGAGTTGCGCTGGCGATGGGCTTGCGAGCTCGCTTACT
ACCACTTGGGGTACTGCTACTACTGTCCTGTGAGGTGGAAGGCGTGTGGTGCGAGGCGAG
CCCGAATGTTCTGGAAGGCGCCGTGTACCTCTGCTCGCTTATACTCAGCATTCCCGCTAC
TGCTACGTCTTCTGTGGCATCAACGGGCGGTCCCTCTTCCTCCGCCAGCACGGAGGCCTG
TATGAGGGACTCGATGCCGTTGGCTGGCGCCGGTATTGAAGCCTGCCTGTAGTTGTTGTT
TGACACGTTTGACGCAGACTGTTTATAATGAGTTTTCTTTCCCGAAGGTTTTCTTCTGCG
AGGCGCCGGAGTCTCATCTATATATAAATCGCAGTCTTCATAATCATATGTATTGGAAAC
TCTTCTTCTAACGGGACGTTCTGATCTTCTGACTGGTGTTAGAGGAGCCGGCTTTTGTTC
TTCTACGACATAATTAGTGGTTGAGTATTGCTGAGCGATGGCCGCGTCGTACGAAGGTAA
TTGATTCTGTTGAAACGATCCGTTCATTGTGTCTTGTACTGTCACTTCATTGTATGGTTC
CTGTGTATTAGCTATGTGTACGTCTGTATATCGTTGATAATTTGGTACTGAGTATGAAAC
TTGCTGCGATCTAAAGTTGAAATCTTGGAAGGAGCCCGCCTTAGTCGTTTCCGAATATTG
ATAGTCGGGTTGCATGTCTTCCGCTGAGTACATACCAGGTCCATAATTAATATCCTGCGG
GTCAACTCTAACATTCCCCTGAATATTCTCATTAGTGAACAGTATCTGTTCCTCGTGGTA
GTCCCCGATGTCCTTCTTGGATATCGTCCACTGGTTGATGGGCTTCAGGCTGGGTGGGTC
GGCCCGGATGAGGTGTGACTTCAGGATGGAGTGCTCGGGGACGGGGTAGGGTGGTGGAGC
TTCATCACGGGATGATGATGGAGAGTTGTTCATTTTAATCTTCAAAACTTTCTTATCGCT
TCTTTCAACGTAACCATTTCCTTCAGTAAAATTCTGAACTTCCTCGTAATTCTGATAAGT
ATATTTTTCTGGCAACACCATTTCTTTTCCTTCGACCAAATATTTGACGTCTGGCAACCC
GTTGGTATAGTCTACGTTTTGGGAATATCTATCTTGGAAACCATCTTTGTCAATGTAAAA
CTTATCTGAGTATATCTTTTCTTCTATATATTCACCGTTAGGAGTCATATGCATTATTGG
TTTGGGTAAGGTCAGTTTTAAAGGCTTGCGGACAGAACTTGAGTGTTTCTTTAGATTTTT
GGTTGGCGAATGACTTTTTATTTTGTAATCCTTATCCTTATTAGAGCTGCTTAATAATCT
TTTCTCTAGAGTCCTCAATTCCTTGCACAGCTCTCGAACTAGTTGACCAGAGTTCAATCT
TTTTGGTACATTATCACGTTTGGCCGGATCCGTGCCTTTCAAGGCGTGCCATTCCTTCAA
AGCATTAGCCAATATTTTAATTCCTCTTAACAACAATGGCGGCAGCTGCGCCGGCGTTGA
TTGAACACAACTTTCACTTATCATAAAATCTTCATCCTGTATCTCTTCATTATGCCTTCT
AAGCATCGTCAGCAAATGTGCACCGGCATACCAATGCATGGCTTCAAATAACGGGTATCG
AAGCAAAGTCGGAGTTTCTACTCTTTTCTCTATCTCATATATCTGTAATTGCATTTCTAT
AGCATAAGAATGCAGTAGATTCCCTCCAAAGACTAAAGAATCACACGGCGTTAATACCGC
GTGGATCCAACCGCTGGGTATGAATAATGTTTGACCCGCTGTCAACTCTGTAGTACCGTA
CCATTCCACCATATCTCCAAAGAATCTTTCATTATGATTGTTTGAAGAACACCACTGTTG
ATATAAAGCTAGGTTTGTGCTGGTCGGTGGTATTAAGTAGAATGTCTTCCTCCCATGCAA
CACATGGTACCACACAGTGGTCCCTCCGAAGTCCACGTGGAAGTCTGTGTAGGAGCCCGC
AGCGGACACCAGGCAGTACTTCTGCACGGCCGGCCGGAGCACCTCGTGTGGGGGCACCGC
TCGCACCGACCAGTCCAGGCGGGTGATCACGTGGGGTGGGTTTACTAGCCCTGACAGTTT
TGTTTCCGAGAACTCTAGACTGAGAACATTTAAAACTTTTTCATCTCGGTGTTCAGGTGG
TGTTTCAAAATATTCAACAAAATCTGCCAGTGTCATTCTCTGTGTTGCCTGTTTCCTTAC
ATCTATTACTTCTACTTCAAGCTGCGCGCCGCAGAACCTCAATACAGATCTGACAGTAAA
TGTACTAGGATTCGGCATCTTCATATCTAAGCCATCAGGCGAATGAAATATCACTGGTTT
TGTGAATCCATTATCCCTAACAAATTCCTCTGTGAACTGTTCAGCGCGCATCTGCTGCAG
GGCCTGCGCTGACGGCCGTGGAGCCCGAGCGGCCAGCGCCCGAACCCACGCCGGAGTCCC
CACCTGGGATGGTCGAGACTCCGCCCCGATCTCGTAGCGGTCCGCACGGTGGTTGTTTGT
TGGGATTTTTAATACTGAAGATCCGTACGTAGGGGCACATTTTGGACAGTGGTACTTGTC
TATGTCATCTGATTGGTAAATTTTAACGTCAACACAGCTGCCATGAAACCACTCACGACA
ACAATCACATTCTATCATAAATTGTCCAACATTATACGGCTGCCCGCACAAGCAATAGGT
TTCCTTCGACGACGCTGCTCTTTTTTTATTTTATTTTAATATCCAATCCAATTA
(3414 bp)

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