SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11438c1_g3_i5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_paxillin_isoform_X2_[Bombyx_mori]
Ontology
GO:0001725 C stress fiber
GO:0005515 F protein binding
GO:0005623 C obsolete cell
GO:0005737 C cytoplasm
GO:0005856 C cytoskeleton
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0007155 P cell adhesion
GO:0007160 P cell-matrix adhesion
GO:0008270 F zinc ion binding
GO:0017166 F vinculin binding
GO:0030054 C cell junction
GO:0035994 P response to muscle stretch
GO:0046872 F metal ion binding
Transcript
Level		FPKM:2.39 TPM:2.35
ORF EntryO_TrvaFAMAMG14232_complete:A_TrvaFAMAMG_TR11438c1_g3_i5
Sequence
(Nucleotide)
GACGAATACTCTGCTCGACGCACACACCTGCCGGCTCGACCTCGCATCCGTGACATTGCC
TTATCACTTATCACAAACCTTATCGATAAACCGAAAAAGAGCAAAATTTTCGATAATGAC
GATCCATAATTGTGTTGTGTTCCTTCGATAGCATTCGGTGCCTTTGCGTCCTTGAGATAA
ACAAATCGGAGTACGTAAACAAGTGCATTAGGGTAAATAACTCGTTAATAAATGTTTATT
TATTAGTTTAACGTAGGACTAGAAACGATCGGTGTATGTGGGCAATGATTATGGTCTGTT
AACACGGTGTCGATCCCGTGGGTGTCCACAACTTGAGAACAGCTTTCCGATTGGCCAAGA
TGGATAGGACAATGTATGGCAAAGTGCTACCAGGCACTTATTATCCATTCCGCTGCGCGA
TGAAGGAGAACGGAATATCGCCCGGCTATGCCCTACTTGCCGATCTTCAGAACTCCATCA
ATCCAGGAGCTCGAGTCAGCAGCCCCGGTGGTAGAACAACATCGCCTGGCGGTCGAACCA
GCTCTCCAGGCAGAACGAGCTCTCCTCTTGGAAGGGGAACGTCACCAGGTCGACTGAGCT
CATCAGGCAGTTTGAGTTCACCAACGTCCACTGGTTATGGATCAATAAACGGATCTAGGA
ACATTAATTCGGATTACGCTAAACCTGCTTCGCCCACCTACCAGAACACAAGCTCATTCC
ACACAGAGAAGATAATCCCTCACAAATATACCAGCAACGTCCAAAGTAACTACAGTGCCC
ACTCGCCTGGCTACGTGGCTCAATCGCCAGGCTACGGCAGGACTGGTGGAAGAGGCAACC
TGAGCGAATTGGACACTCTACTGGATGACCTGAGCAGCGCTCGGTACGGAAATTATACTG
AGAAGAGTTTTACTGAAAGATCTTTAAATGACAGCTACGGTCGCAGTAATGGAGCCATCA
GTCCAGCGAGACCGACAGTTGACTCTCTGCTTGATCAACTCAACGCGGACATACCTAATG
GCCGCCAATCGACATCTCCGATACCACCATCGACGGGAGGTACTCTTCCCCGTCCGGGCA
CCAAGCAGGTGACGGTGACCGTGCAAGAGACTGTCGTGGAACCCGCCCAGGCTCAGCAGC
AGATCCCGGTGGCAGCGCCGGTGGTCAGGCATCAGCACCACGCGTCTAGCGCCACGAGGG
AACTCGATGACTTGATGGCATCTCTGTCTGATTTCAAGGTGAGCGGCCCCGGAGCACCCG
GAGCAGACAGCGGCACTCACGTGTACCGAGAGAAGCGCGCGTGGCAGGAACAGTACCGCT
CCACCCCGCGCCAAGCCGAGTCCGCGTCCCTCGAGCACATGCTCGGATCTCTCCGAGCAG
ACATGAGCCGCCAAGGAGTACAAACCCCCCAGAAGGGATGCTGCAACGCCTGCGAGAAGC
CCATCGTCGGACAGGTGATCACCGCGTTGGGTCGCACCTGGCACCCTGAGCACTTCACCT
GCGCTCACTGCAACCAGGAGTTGGGAACGAGAAACTTCTTCGAGCGAGACGGCAGGCCGT
ACTGCGAGCCTGACTACCACAACCTGTTCTCGCCTCGATGCGCCTACTGCAACGGACCAA
TCTTGGATAAATGCGTCACAGCTCTCGAGAAGACATGGCACACGGAGCACTTCTTCTGTG
CTCAGTGTGGACAACAGTTTGGAGAGGACGGGTTCCACGAGAGGGACGGCAAGCCTTACT
GCCGCGCTGATTACTTTGATATGTTTGCCCCCAAGTGTGGTGGTTGCAGTAAGCCCATAA
TGGAAAACTACATCTCCGCACTGAACACACAGTGGCATCCAGACTGCTTCGTATGCAAGG
ACTGTCAAAACCCCGTCAAAGGCAAGTCCTTCTATGCCATGGAGGGAAAGCCGGTATGCC
CAACATGCGTTGGAGTCGATGATGATGAATAAGGAATGCCCCCAATTGTCCCCAACACAG
AACGAATGCCCTCTCCCAAGTTTTTTTACAGCTATGCTCCAAACGATCTTATGGAATGCA
AACATAAACACAACACAGATGCTACTCACACACACACACACACACACAC
(2089 bp)

- SilkBase 1999-2023 -