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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11411c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000395 P mRNA 5'-splice site recognition
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:12.92 TPM:12.66
ORF EntryO_TrvaFAMAMG14121_complete:A_TrvaFAMAMG_TR11411c0_g2_i1
Sequence
(Nucleotide)
TTTGTCAATTTGTGGAAATGTTGAATTTATCAATCTAATAAAATTAAAATTATAATTTGA
TCTTGTTCTTAATATATTGTAGCTCGAGTGAGTTGAGTCTTGTTTTCGTGTAATCATATT
TACAGTTCGGAATCTGATACACGGCCATCATAAAAATGGAAGATGAAACAAATTCCGACA
TTCAGAAAACTTCTGAGAACCCAATGGACACAGACGAAGGTCCCTTGCTTAACGAGAACT
CTAATGGACTTTCTCACATATTGACGGAAGGTGAATTTAATAGCGTCGATGCAGCTGTTG
ATGAGTCCTCCACTTCTAATCAATGTTTCTTAAACGCTGTGGAGTTATCAGAAGGAAGCG
CCGGCGATTACCTTGAAAATAATGGCCCTCGCTTTAGTACGGACTCTTTTGATATTGGAG
ATAATGCAGTTACTTTTCTCAACGATTCTTTAAATTGCGTGCTAAACGAAGACAACTCTA
TACAAAGTGATTCTGCATCTCATAAAGCAGTCTTAGACACTGACAGTAGGCAGTCTGAAA
GTCAACCTGCCGCATTAGGGACAAATGAAAACTCTGATAATGATAATTTATTTACTATTG
GCCTTAATAGGGTTACAACCGAGACTGACTGTGATATTCATGACCAGCAACAATCAGAAA
ATAACATTTACTTAGATAATGACTCCAAACTCGAGTTAATAGATAAACCATTTGAAGAAA
TAATTGGTAATTCTGAAGTGATAGAGTCTACACCACAATCAACAGACAACAATGACTGTT
TAGAAGTACCAAATGAACATATTCTTTCTACTGAAATTAAAAATGTGATTGGCCAGTCAG
AACCTCAATCGATGGAAACTGATGAACAATGCAACGAGGAGGTTGAGAAAACAGAAGAAA
ATAATGAAGCTCTCAAAGAAACACCAAATAGGGTTGGTGGTGCAGAGGAAACAGAAGTTG
TATCAGAAGATGAGCTCCCGGAAGTACAAAAGCCGAGCATCAAGGATGCTGAGAATGTAT
CAGATGATGAATTACCAGGACCCAAACCAGCAGAATTGCCTGCTGATACTGAGGTTGTGT
CAGAGGATGAGCTGCCATCTTCGAAAAAAGAGTCCAGAAAACGCAAACCAGATGAGGAGA
AAAGTAATTATGATCCGGGATCACCAACATCAGAGGGAGAATCTGCAAACAAAAAACAAG
CTGTTGCTAAGAATGGTGAAAGCAAGCCTGTACCTGCAGAGAAGAGAACTTCGATTGATG
AAAAACCTAAACCGAAAGTTCTACCAGAATTAGAAAAGTACTGGAAAGTTGTTAATGACG
ATCCAACTGATTTCACTGGGTGGACTTATCTATTGCAATATGTGGATCAAGAGAGCGACG
TGGATGCGGCTCGTGAAGCGTACGACGCGTTTCTGTCCCATTACCCGTACTGCTACGGGT
ATTGGCGAAAATTCTCTGACTATGAAAAACGTAAAGGAAGTAAAAAGAAGTGTTACGAGG
TGAGTCATAAGATGATTCATATAAATGATACAATGTTTAAGTCACATGGTGTGTTGGTAA
GGCTTCTACACCAAATTGATGAGTTTTGTTAATCTCTTGAACACTTGGATTTTTGTAATT
TTTGGTCATATATGGTATTTTGCAATTATTTTTTTTCCCAACAGTGCTACGAGGTCCACG
ATGTTCGTATACGAAAGACGTCAGGTCACAGCGGAGAGTTGTATTACTATCAAATAGTTA
TATTTTTAGTGATACTTATGCTATGGTGTATTGTTTGTATTCTAGTGCTTATATTTAATA
CAACTTGTACATGCATGATGTATTGTAATATTTCTAATGTATATTTAACTAAGATCATAA
TGAGTTATGGATATAATTAAGTTGAAACTAATCCATGAAAGCACGTTAGCACGGATCGCA
GCTGGCCTTCGTATTTAGCCATTTCGAAGATCACGGCGAAGACATCGAGAGGCCGTCGTC
GCACTGAGAACAGGTGTAATATGCCCGAACAAACATTTTATTATAAACAGATAAAGCGAG
ATGTTGTGTCCGCGCATTCTTATTCAAGTAGGTGCGACCTCTCGCTTACTCTGTTATACA
AAATTGAATGAAAATACATTTATTTATATTATAATGCTATTGAATATTCCCTTGCTATCA
TAGTATTGTCGTCCATTTGACAATGCTTTAGCGCTCGCGGAATTATGCTAATATCTGTTA
TGTTTGCAGGTATTGGAAAGAGGACTTAAAGCTATACCACTATCCGTAGATCTCTGGATA
CATTATCTTAATCATGTAAAGACAACAAGGACGGAAGATCATGCATTCATCAGGTCACAG
TACGAACGAGCAATAGATGCCTGTGGCCTCGAATTTCGCTCGGATCGTCTTTGGGAGTCT
TACATCAAGTGGGAAGCGGAAAACGGTTCTGCCCTCAATGTTACAAATATCTACGATCGT
CTTTTAGCAACACCTACATTAGGTTACACTTCACATTTCGACAATTTCCAAGAGCACGTG
ATGTCGGAGCCGGTGTCGGGCGTGGTGTCGAGCGAGGAGCTGATCCGGCTGCGCGGCGAG
GTGCGGGACGCGGTGGGCAGCACGCCCGCGCTCGACCTGCCGCCCGGGGAGGACGAGCCG
CTCGATCACATTGCATCGGAAGAAGAAGCACAAGCCATCAAAGAACGTATAGTTGCGGCG
CGGAGGAAAATACACAAAACTACGGGCGAAGAAGTAGCCTCGCGGTGGACTTACGAAGAG
GGAATAAAACGTCCATATTTCCATGTGAAGCCACTAGAACGTTGTCAATTGAAGAATTGG
AAAGCATATTTGGAATGGGAGAAACAGCATGGCTCGTTCAAGCGAGCGCTGGTACTACAC
GAGAGATGCCTTATTGCGTGTGCCTTATATGAAGAGTTTTGGATGAAGCTTATAAAGTTC
CTGGAAGAGCGCGCCGAACAAGATCCCGAAGCGATAGCTATAGGGCGCGAGGTGTTCGAG
CGAGCGTGTACCGTGCACCATCTAGACAAGCCCGAGCTACATCTGCACTGGGCGCACTTC
GAGGAAGTACAAGGGAATACAGCCAAAGCAGCTGAAATCCTTGATCGTATAGAGAAAACC
TGTCCCAATCTTGTTCAAATACAGTATAGACGAGTGAACCTCGAGCGGCGTCGCGGCGAT
TATGACAAGTGTTCCCAACTATACGAAACCTACATCGCCGGCGCCAAGAACAAGTCGATA
GCCTCGGCCCTGGCTATCAAATACGCACGTTTCCTGCAACACGTGCGGCAACAGCACGCC
GCCGCCCGCACTGTGCTCGACGAGGCTATCACTAAAGACCCGCTCAACTCGAGACTGCAC
TTGCAGAGACTAGACCTCGCTATCAACACACCTGGAATTGCTTATGAAGAATTGGATGAG
CTGGCTCAGTCGTACGGCAAGCAGGAAGGCGCGGACCCGGAGGAGAGCGCTCGCATGGCG
GCGCGACGACGCGACCTCGCCGAGGAGCTCGGGGACGCCGCGCACGCTCGACTGGCACAC
GCACACGCGCGGTCGCTCGCCAAACATCTACGCAAGCGGACGCGCAAAGAGAAACACGAC
CCGCCGCCGCCACCCGCATCCACGGAGGTAAAAAAGAAGGAGAGCGCCACGACAGGAAGC
AACACCGTGGCTACAACGAGCGCCAACTACTACGCACCAGCAGGAAGCGCGCCCACATAC
GAGCAGTCATACACGCAGCCCTACCAGCCGCCCTGGGGATACCAGCAGCCACCCGGACCC
TACCAGCATCACCCGCACGCCTGGCCGCAGTACCCCAACTACTACTAGACTACATATACA
ACCGTACAAGACATGCTTGCAAATATAACAATATTTACTGTATTCATTAATTTTATTAGT
CCATGTTTTAAGAGTCTTTAAAAACTTTAAAATAGCGAATTAAAATCTTATATCCAAGAT
TTTATAAAAGTTATAATATAGCAGTGATTGTTATCAATATTGACAAAATTTAAGTTTTGA
ATTATATTTTACAAATCATAAAAATTACAAAGCTTAATTTCCAGCATTGTCTAAAAATAA
AAATTGTACTACTGGAAAGGGCACCATAAATTAATTCACGTATTTTACTTCCTACTTTAC
ATTTACGCTTCAGTTGAGACACTAATCTATTCGTTATTTCCAATGTAATGAGTAACTGAT
TTTTGTCAAGTTTTTATGTAACTAGTAGTTAACTAATACCTCCCTATCATTTTTAACAGT
GTCTTTAGAGTGTGTTGTATTCAATGTTTGTAACTCAATACAAAATGCAAACTAATTTAT
ATCTACTAATATACCAAAATAGGCACTGATTTATGAGTTAAAAGTTTAAAGATATTGAAA
TATTCTATTATTAAAAAATATGTAATATGATAGCTCGAAAGCTTGCAGATATTTGCAAAA
GTTTTTAAATTTTGTCACATTTATTTTTTCTCAATTTTTAGGTTATATTACTATATTATC
CATATATTAGGAAAGAAATTTCAGCTACTTTAAGCTTTGAAGAATAGGCTAGGTTCTGGG
GATGTTGCGAATGTCGACAATGCGAATGACCTTTCAAACAAAACGTTCAAGGTTTTTATT
GACAAGTCAGGTGTAATCCATAATTCATTATTATTCATAGGTACTATAAAATTGGTACCT
ATACTTTACCTATAGGTACTCGTTCTACTAGGAAAGGGAAGGGGTACTTGCCTCTCCACT
ACCAAATAGTTGTAACCCCCACTTAATCTTGACAACGGAAGATCGTAGACTCATCGAGTT
TGCGCTTATTTTAAATAGCAGATAAATAGTATTTATCTTGACTCTATCAGATTCCCTCCA
TATCCACATAACATCCTCCTAACATTTGTCAAAATATTCGTTCATCGTTCATTTTGTCAA
TGCGAATATTCATTAAATCCCTAATAGGTTATTAATGATAAGGTGTTTTCATAGAATTAT
GATAAAATTTGTAGGTTAATAAATGAATTTAAAACTAAAATCTTGATTTTAGATGCCTTG
ATTGAGTACAAAGGATAGTGTCAAGCAATATATTATGACTTAAATATTAAATTCTATTTT
GTAAGTTGTTTGGAAATTAATTGATTACTAAAATGTTTGATTTTTTTTACTGAAGTAAAT
AAATAAAAACTGATCTTTTTCTGTTGTACAAAGAACAGAAGACATGGTTCAATGAAAATA
AGTACATTTTGAATTTAAAACTGAATATCATTAAAATGGGTTGAATGTTTTTCTTATTGT
TTCAAGGAGGAAGTGCTTGGCCTACAAAGTAAGTTTCTCCTAACAATAACGTAAATGTGT
TGTTTAAAACATAAGAAATACACCTCTTTACATTTATTTTTGTTATATTCGATTAATGTA
AAGTTAGTTCTGGAGCTTAGTTTTACCTGTTATTGTAAAATTATTTAATTCATCTTATTC
TTTACACGCATTAACGTTGTTATGAGACGTTAAAAAAATCACAGTTCGTAAGTTATAAAA
ACAAAACTTTAAATTATAATTATCGTAATACAGATGTCCTCAATAAAGCTTCAGTACACA
AAAACAAAA
(5589 bp)

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