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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11411c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-processing_factor_39_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000243 C commitment complex
GO:0000381 P regulation of alternative mRNA splicing, via spliceosome
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0030627 F pre-mRNA 5'-splice site binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:1.39 TPM:1.36
ORF EntryO_TrvaFAMAMG14120_5prime_partial:A_TrvaFAMAMG_TR11411c0_g1_i1
Sequence
(Nucleotide)
TGGACTTACGAAGAGGGAATAAACCGTCCATATTTCCATGTGAAGCCACTAGAACGTTGT
CAATTGAAGAATTGGAAAGCATATTTGGAATGGGAGAAACAGCATGGCTCGTTCAAGCGA
GCGCTGGTACTACACGAGAGATGCCTTATTGCGTGTGCCTTATATGAAGAGTTTTGGATG
AAGCTTATAAAGTTCCTGGAAGAGCGCGCCGAACAAGATCCCGAAGCGATAGCTATAGGG
CGCGAGGTGTTCGAGCGAGCGTGTACCGTGCACCATCTAGACAAGCCCGAGCTACATCTG
CACTGGGCGCACTTCGAGGAAGTACAAGGGAATACAGCCAAAGCAGCTGAAATCCTTGAT
CGTATAGAGAAAACCTGTCCCAATCTTGTTCAAATACAGTATAGACGAGTGAACCTCGAG
CGGCGTCGCGGCGATTATGACAAGTGTTCCCAACTATACGAAACCTACATCGCCGGCGCC
AAGAACAAGTCGATAGCCTCGGCCCTGGCTATCAAATACGCACGTTTCCTGCAACACGTG
CGGCAACAGCACGCCGCCGCCCGCACTGTGCTCGACGAGGCTATCACTAAAGACCCGCTC
AACTCGAGACTGCACTTGCAGAGACTAGACCTCGCTATCAACACACCTGGAATTGCTTAT
GAAGAATTGGATGAGCTGGCTCAGTCGTACGGCAAGCAGGAAGGCGCGGACCCGGAGGAG
AGCGCTCGCATGGCGGCGCGACGACGCGACCTCGCCGAGGAGCTCGGGGACGCCGCGCAC
GCTCGACTGGCACACGCACACGCGCGGTCGCTCGCCAAACATCTACGCAAGCGGACGCGC
AAAGAGAAACACGACCCGCCGCCGCCACCCGCATCCACGGAGGTAAAAAAGAAGGAGAGC
GCCACGACAGGAAGCAACACCGTGGCTACAACGAGCGCCAACTACTACGCACCAGCAGGA
AGCGCGCCCACATACGAGCAGTCATACACGCAGCCCTACCAGCCGCCCTGGGGATACCAG
CAGCCACCCGGACCCTACCAGCATCACCCGCACGCCTGGCCGCAGTACCCCAACTACTAC
TAGACTACATATACAACCGTACAAGACATGCTTGCAAATATAACAATATTTACTGTATTC
ATTAATTTTATTAGTCCATGTTTTAAGAGTCTTTAAAAACTTTAAAATAGCGAATTAAAA
TCTTATATCCAAGATTTTATAAAAGTTATAATATAGCAGTGATTGTTATCAATATTGACA
AAATTTAAGTTTTGAATTATATTTTACAAATCATAAAAATTACAAAGCTTAATTTCCAGC
ATTGTCTAAAAATAAAAATTGTACTACTGGAAAGGGCACCATAAATTAATTCACGTATTT
TACTTCCTACTTTACATTTACGCTTCAGTTGAGACACTAATCTATTCGTTATTTCCAATG
TAATGAGTAACTGATTTTTGTCAAGTTTTTATGTAACTAGTAGTTAACTAATACCTCCCT
ATCATTTTTAACAGTGTCTTTAGAGTGTGTTGTATTCAATGTTTGTAACTCAATACAAAA
TGCAAACTAATTTATATCTACTAATATACCAAAATAGGCACTGATTTATGAGTTAAAAGT
TTAAAGATATTGAAATATTCTATTATTAAAAAATATGTAATATGATAGCTCGAAAGCTTG
CAGATATTTGCAAAAGTTTTTAAATTTTGTCACATTTATTTTTTCTCAATTTTTAGGTTA
TATTACTATATTATCCATATATTAGGAAAGAAATTTCAGCTACTTTAAGCTTTGAAGAAT
AGGCTAGGTTCTGGGGATGTTGCGAATGTCGACAATGCGAATGACCTTTCAAACAAAACG
TTCAAGGTTTTTATTGACAAGTCAGGTGTAATCCATAATTCATTATTATTCATAGGTACT
ATAAAATTGGTACCTATACTTTACCTATAGGTACTCGTTCTACTAGGAAAGGGAAGGGGT
ACTTGCCTCTCCACTACCAAATAGTTGTAACCCCCACTTAATCTTGACAACGGAAGATCG
TAGACTCATCGAGTTTGCGCTTATTTTAAATAGCAGATAAATAGTATTTATCTTGACTCT
ATCAGATTCCCTCCATATCCACATAACATCCTCCTAACATTTGTCAAAATATTCGTTCAT
CGTTCATTTTGTCAATGCGAATATTCATTAAATCCCTAATAGGTTATTAATGATAAGGTG
TTTTCATAGAATTATGATAAAATTTGTAGGTTAATAAATGAATTTAAAACTAAAATCTTG
ATTTTAGATGCCTTGATTGAGTACAAAGGATAGTGTCAAGCAATATATTATGACTTAAAT
ATTAAATTCTATTTTGTAAGTTGTTTGGAAATTAATTGATTACTAAAATGTTTGATTTTT
TTTACTGAAGTAAATAAATAAAAACTGATCTTTTTCTGTTGTACAAAGAACAGAAGACAT
GGTTCAATGAAAATAAGTACATTTTGAATTTAAAACTGAATATCATTAAAATGGGTTGAA
TGTTTTTCTTATTGTTTCAAGGAGGAAGTGCTTGGCCTACAAAGTAAGTTTCTCCTAACA
ATAACGTAAATGTGTTGTTTAAAACATAAGAAATACACCTCTTTACATTTATTTTTGTTA
TATTCGATTAATGTAAAGTTAGTTCTGGAGCTTAGTTTTACCTGTTATTGTAAAATTATT
TAATTCATCTTATTCTTTACACGCATTAACGTTGTTATGAGACGTTAAAAAAATCACAGT
TCGTAAGTTATAAAAACAAAACTTTAAATTATAATTATCGTAATACAGATGTCCTCAATA
AAGCTTCAGTACACAAAAACAAAA
(2844 bp)

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