SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11338c4_g2_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_uncharacterized_protein_LOC105391048_[Plutella_xylostella]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:17.43 TPM:17.07
ORF EntryO_TrvaFAMAMG13547_5prime_partial:A_TrvaFAMAMG_TR11338c4_g2_i2
Sequence
(Nucleotide)
TTGGCGAATCGTCCCGAGTCTTGGTGGACGAGGTCCATGAGAAAAAAAAAAAAGAAGAAG
AAGAACCAATGTAAGCGTGCCCGCACACCTTTAAAAAGTATTGTCAATATTTAGAGTATT
AAAAAGACTATTGTAGTTTTGCGTGGCATATTGTCAATATCGTTGTGGAAATATTTTATT
CCTGTTTATTTCGATAAATTTTATACAATTTGCTCGGTGTGCACGCGCAGCCTTCCGGCG
TCAAGTTCGTGAGCTGACTGACTAGCGCAATCATTCGCAAGTGAACCGGTCGCGCGGTGT
CGGCAAGTACCGTTAGCTTTTTATGAACGGAAGGGCTGCGCGCGCATTACAATAACATAT
TATTATGTAATTAACATCTAAATTATTATAAGTACACTAATTACGTTTATAACGTTTTGT
GTAGGTACAGGTCGCCACACCAGCCCCCCCTATAGACCTGGACTAAGGTCGATAAAAATT
TGTAAAACGCACAACACGCCCACATCGCGTACGCTTCTCTGTACTAGGCGCATAGTCGAA
CGTCTCAGTTGGTATTAAGTGATCGTCATTAATGTTAGTAGTATTTAAGATATGGGCTGG
TTTTAACCTGTCTATCGAAACATTTACTAATTTATTATTGTAGTTGATTTTAAAATATTT
ATCATATCGTTCAATAACCTTGAATGGTCCAGTGTATGGAGCTTGAAGGGGGCGTTTGAC
CGCGTCTTGTCGTAAAAAGACATGTGAAGAATTATTGAGGTCTTTATGTATAAATATTTT
TGTATTTCCGTGCCTTTTAATACACGTTGGCTTGAATTTTTGTATCTGTAATCTTAAGCG
ATTAATAAAATCGGTGTAGTCTAATAGTTCGTGTTTTGAGGCTTCGAAGAAATCTCCGGG
CAATCGCAATGTTTCGCCGTAAACTAATTCTGATGAACTAGCAGAAAGATCTTCTTTCCA
CGCTGTTCTCATACCTAATAAAATTATAGGGATTACGTCAACCCAATTTTCGGTACCGTG
ACATATTATGGCAGCTTTAAGTTGTCTGTGCATTCTTTCAATTATACCATTTGAAGATGG
GTGATAAGCCGTAGTTTGAATGTGTCGTGTTCCTGTCATTTTTGCTAGTTGTGCAAAAAT
GGAGGAAACGAATTGTCGACCTCTGTCTGACGTAACGTGTGTCGGGCATCCAAATCTGGA
TATCCAACCAGTTAGGAAGGCTTGACAGACAGTATCCGCTTTAATGTCTGCGATCGGAAT
GACTTCTGGCCACCTTGTAAACCTATCTATTGCTGTCAGGCAATATTGAAAACCGTATAC
CGATGGTAATGGGCCAATAAGGTCTATGTGAACTTGTGCGAATCTTTGAGTAGGAGTTGA
AAAATTATGGATGGGTGAGTGAACATGACGAGATATTTTAGATTTTTGACAAGCGAGACA
AGTCCTGCACCATTCACGACAGTCCTTTCGGACGTTAGGCCAAACAAATCGTTCGGTAAC
GAGTTTCGTGGTCGCTTTTGCGCTAGCATGGCTTAATCCATGGATAGCGTCAAAAATGGG
TCGTCGAAATTCTGGAGTCACGTAAGGACGAGCACGCGGACCGGATACATCGCAGTATAC
CGTTTCCGTGGAATTTGGAATTATACGTTTTACAAGATGCAGAGATGAACTTTTGTTCAT
AATTAGTTTTTTAAGTTCAGTATCTGTATTTTGTGATAATGCTAAGCGATCAAAGTCAAT
ATAACTGAGCTCGGATATCGATCTCGATAGTGTATCGGCGACTACATTAGTTTTACCTGA
TATATGACGAATATCAGTTGAAAATTGGCTTATAAAATCCATATATCGAAACTGTCGAGG
AGAATTGTTTTCTGATGGTTTTTTAAATGCGAATGTTATAGGTTTATGGTCTGTAAAAAT
ATAGAAATTTCGAAGTTCGAGCATATAGCGGAAGTATTTTACAGCTTCATAAATCGCTAA
CAATTCCCTGTCGAAGGGGCTGTACTTACGTTGTGCCGGAGAAAGTTTTTTTGAAAAGAA
TCCCAACGGTTCCCATGCATTGTTGTTACGTTGTTGAAGGACGGCTCCTATAGCAGTATC
TGAGGCATCCGTGACTAACGACATTTCTGCATCCAATCGTGGGTGAGCTAGTAACGCAGC
ATTGACTAACTGCTCTTTGCAAAGTTCGAAAGCATCTTTTAGCTTTGTTGTCCAAACGAT
TTGAGTTGTACTTTTTATTTTTGGACCAGATAACAAGGCGTTTAGTGGTACTTGCTTTTC
GGCAGCATGTGGTATAAATCTGTGATAAAAGTTGAGCATGCCAAGGAAACGTCTTAGGTC
TTTTATTGAATTTGGGAGTGATAGTGATTGAATTGCTTCTACTTTCTCTGGTAATGGTTT
TGTACCTCGATTTGAAATTTTATAGCCTAAGAAAGATACTTCTGTCTGCCCAAAATTACA
TTTTGACGTATTAATGACAATGCCATGTGCTTTTAGTCGCTCAAAAATGATGTTAAGGTG
ATTTTGATGTTCTGTTTCGTTTTGTGAGGCTATTAAAATGTCATCTAAGTAAACATAAAC
AAAATCGAGACCTCTCATGATTTCGTCCATGAACCTTTGAAACGATTGCGCGGAATTTTT
TAAACCAAAACTCATAAAATTAAATTCATACATTCCAAAAGGCGTCGTGATAGCCGTTTT
CGGGATGTCTTCAGGAGCGACAGGAATAAAGTGATAAGCCCTAACGAGGTCGAGGGTAGA
AAAAATTTTGCATCCGTGTAAATTATGAGCAAAATCGGCTATGTGTCGAATAGGATATCT
ATCGGGGATCGTACGTGAGTTAAGCGCGCGGTAGTCCCCACAAGGTCTCCACCCATTAGT
TTTTTTAGGAACCATATGGAGGGGAGAACTCCATGGACTGTCTGAAGGACGTATGATACC
TGCACTTAGTAACTCTTCGAATTCTTGTTTAGCTAAACGGAGACGTTCTGGATCTAGACG
CCTAGGTCGAGAGAAGGTGGGCGGTCCGGGCGTGGTGCGGATGTAGTGTAGCGTTTGATG
TTTCACTGTGCGTTGCAAGTCTCCGCTTGGCTTCGTAATCTCGGGGTACTGCGAGAGGAG
GTGGTGGTATGGCGAACTCC
(3140 bp)

- SilkBase 1999-2023 -