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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11336c7_g5_i7
Scaffold_id
NCBI non-redundant
(nr)		putative_UPF2_regulator_of_nonsense_transcripts-like_protein_[Danaus_plexippus]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0001889 P liver development
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006406 P mRNA export from nucleus
GO:0031100 P animal organ regeneration
GO:0035145 C exon-exon junction complex
GO:0042162 F telomeric DNA binding
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:9.75 TPM:9.56
ORF EntryO_TrvaFAMAMG13441_complete:A_TrvaFAMAMG_TR11336c7_g5_i7
Sequence
(Nucleotide)
AGTACCTACAACGAATCTTAAAATTTTCGCGCCGTGCCGCTTAATATTTGTTTAAAAATC
GCGCGTTTGACGAAAAAATAAAAACACGAGATATTTTACTACACCCCCCCTCCCCCTTTC
AAGCCTCACGTGATTAATGGACAACCCCTTAGCAAAATCTATTTAAATTTCTTAGGTCCA
AATATAAGGTCTGCATCGGGCGCTCCCTTAGGATGTTGGTATTTCTGTCGCACGTGCTGC
CCTCTGTTGGGGTTGCCGAGTCCGCCGGAGCCGCCTCCGCTCTCCGCGCTGTATTCCTCC
TCTTCTTGTCGTTCCGATATGTTAAGTGTTAACCGTTTAACTCGTTCCATTTCTTGTTTG
TCAGCGAGGGCCTGTTGTTGTAGATTGCTAGCGAGTTCCGGCGGGGCGCTGAATGACTTA
TACTGCGGTTTCGTTCCTTTACGAACCATGAGGACAAACTCTACGCCTTCTTTACCTTGC
AGTAATTGTTCGTAAGTTTTCTTGGTAGTTTGTCTGCAGGTCATGGGCACGGCGATGTCT
CGTTGTTGCGGTCTGTTCTCACGTTGTCTCTCTGCGATGTTTTCGGTCACCATTTTCTCG
AATGCCGATTCAAATTCAACGTCTTCCACAACTTTAGAAGCCGGTCTCCGTGGTTCAATT
GTTATTTCATCTTGAATTTCGTTTTCATCATTTATATTATTTTCAGTGATTGGTTCGTCA
TCGGAACTTTCTTCATCAGGCAGTTGAGGATTGTCAGTTTCATCATCAGTCTCTATAATC
GTATCTAAGCCATCGTTCACACTGTCGTCTCCTTGATCATCGTTATCATTTTCTTCTTCA
CCTAATTCTGGATATAAAGCTTGTCGCAGTTCATCTATAGCATCCTTACATTGCTGCCAG
CTCGTAAACAAAGTCAATTTGGGTCGTAACGTCGTTAGACATTCTTGATAAATGTACTTT
ACGTAAATAGGAAACTGATAGTCTTTTGTCCAAATGGGGTCTGACAACTTGAACCAATAA
TAATTTTGGAAGAAAGTTAGGAAATAGTCCAATCTTTTCTTGCTTGAGCCACTGTTAAAG
TACGCACCGCAAGTTTCAAGAAGAGCGCAGACCAATCTAATTCTGAAGACATTATCGGGC
GGATCTAAAGGAGAGACATTCCCGTGCTCATTGGTCACACCAAATGTTATAAACGAATAT
AAAACAGTAAAAACGTCTCGTGAATCCAGTAACTTGTAATTATAAAGTTCTCCTAAATAC
CGTACTGTAGCTATCCTTCTCTGGTTATATCTGGGGTGTGGGTCTTCCATGGTTAGTCGT
ATTTCTTCTAAGATGGTGTCAACAACTGCTGGTGCTACAGCTTCCTGCCAGATGGCGAGT
TCGGCCGTGAGTCTGGCAAGCGCTCTTCTGGCACTGGCACGGACCCGCCAGCCTCCAGCT
AAATGTTGAATAGCTATTGCAGACACCTCTGGGTCATCCCAGTTCAATTTACGCATTAGT
CTCAATATCTTTTCTTCGTTACTTTTCTGTAAATCTTCATGGAGCACTTTTCTTATGAAC
TGATGTAGCGGCGGCTCTTCTTCCTTGGGTTGAACAGGTGTTTCAGGAGGACAAACGTAG
TAAAACGCGTTCTCTATTTGTGTTACGTAACGGGAATCGAGAGCTGAAACAGTCTTCTTT
CTCATCATTTGCTGTAAATAAATCATAGTCCTTTGATGTGTATCAGGATTGCAATATAGA
TATCTTCCACATGTTTCGAGCAGATTGCATGCCATTTCTATATGGTGATGTTTAAAATCG
TGTAACAGCACTTTCAAACAATACAAGGCCTCCATTTTCGAATATAAATTAAATTTGACT
AGTTCTCCAATAAATCTCACAACTTTGATCTTAGATTCAATATTTATTTGATCTTTTTTC
TTGACATGAAACTTAAAATCTTGTTTTAACATTTGGCATAAATCAACACAAACTTCTGGT
AATACAGGATATAAAATTGCTGCAAATCTTGAGTAAAATGGTAATAAATCCAATCTTGTT
CTAGCAACACTGAACAGAACTCTTGATAATTTCTTGCGATGATTCTTTGTATTGAGATTC
AGTATAAAATCAACAGCAGCATTGTCTATAAGTTCACGATTTATACAGTTTGGTAGTTCA
TTCAAGAATGTGTCAAGTCCCTGTTTATTAGATACATTAGTTGGTTGAACCTCTTCTGGT
TCTGCAACAACAGGTGTGTCCTCATTGTCACTCAGTTCATCCTCCTTCAGATCTTCATCT
AACATTTCTTCTGTTACTGTTTCAGTCTTACTTTTTACAGTCTCTTTCATTTGATAATTA
GGCATAAAAACTTTCAAATCTGGCAAGCTTGTGTAAAATGTTCTAGAATCTTCATCAGGC
CAAGGGTCTGTTCCTGCCTGCATCATGATGTCCTCGTTGCCTCCGATGGTCACAGTTCCT
TGCGTCTCAATCACTGTGAGACTAAGAGTGGGTGGTTCACCAGCTTCACCCAGATCTTCA
CCCAGTACTTCAGCAAAGTTTTGAGCATTCGCCAGCAATTTATCATACGTGGTTTGATGT
TGTTCCAATTGTTCTTTTCTCTCCTGCGATAGTTCTCCCCTAGTGTGTAGAGTTCTCTGG
TTTGCTGCATGGAGAGCTTGTAACGCTCTCTCAGCCAAAAGATGTTTGGTTAGAGAAAGA
AAGTAATCTTTTAGTAGGGTTCTCACAGCAGTCTGTTTTTCTGCTGGAAGAAATGTATTC
CGAGGCACAGGTATATTGTATTTTTCAGATGCTTCTCTTATCTTCTTAGGCATTAGTCCA
GCATAGTCATCACCACAATGCTTACAAAATGATAATAAAATTGGTATATTGTTGTGCTCT
TCTTTATCCATGTTTATTAGAACAGTTAACACATTGCCGAGAAGGGGCAAACCTGTTTTA
TTCATAAATATACCAACAGATACCAACTCTGCATAAAACCTTATGTCCACTCTCAATTTT
GATGAATTTGTTATTTTATCAGTAGCTTTGAATGTAAGAATTTTTTGCCAATTTTCGAAG
AAGCTTGCTGAAAATTCGGCATAGGTACGATGAAGGGCTGAGCAAAGAGTTATAGCAGCA
GGAATATCAGACATTTTTAGTTTTGCTTCTGCTATAGCAGCTGCCACCTCGGATATGTAC
TTAGTTAGATTCAAAGTAGCAAAGTCTTTCATAAGTGCATCCAGTTGAGAGGCGCTGAAT
GATTTTAGTTTTTTGACAAATGTTGTATTCTTCTTCAGGCCAGAATCTAGTTTGGAAAAA
TAATTTTCTGGAGGGCGAGTACAATTCAGATTAAGATTACGTATTTCATGTTTTTGTTTT
AGCCTGGCTTCTAAGCTAGCTGCATACTCTTCAACAGCCGCTTTCTCATTTTCTTCTGCT
GTAGATGAATCCTCTGGTGCGGATTCACTTGGTTCCTCATTGTTCGTAGCAGTCATTTTT
TAATACAACAATAATTTCATGTATCTATTGCCTGGTTGGCGTAGCCAGTCGAATCTTTTC
CTTAATAAAATCACAAAAACAAAACGGTGTCGTGC
(3575 bp)

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