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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11300c0_g2_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_THO_complex_subunit_2_isoform_X1_[Bombyx_mori]
Ontology
GO:0000346 C transcription export complex
GO:0000347 C THO complex
GO:0000445 C THO complex part of transcription export complex
GO:0000784 C chromosome, telomeric region
GO:0000902 P cell morphogenesis
GO:0001824 P blastocyst development
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006397 P mRNA processing
GO:0006406 P mRNA export from nucleus
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0010793 P regulation of mRNA export from nucleus
GO:0016607 C nuclear speck
GO:0016973 P poly(A)+ mRNA export from nucleus
GO:0017145 P stem cell division
GO:0046784 P viral mRNA export from host cell nucleus
GO:0048666 P neuron development
GO:0048699 P generation of neurons
GO:0051028 P mRNA transport
Transcript
Level		FPKM:11.42 TPM:11.19
ORF EntryO_TrvaFAMAMG13063_5prime_partial:A_TrvaFAMAMG_TR11300c0_g2_i2
Sequence
(Nucleotide)
TGAGATGACATTTACGTTTTTTTTTTTTTTTTTTTTTTTTGATTTGATAAAAGTAGTTAT
TTATTTTATCTCTTAATTGTATACAATTTTATTATGTCTTTAAAAATATTATCAGTGAAG
GTTTTCTAGAATTGTCCGACGATAATAATATGGCAGGCAGGCTCTTCTTATCTTCGTATC
TTCGACTCATTGCTACGCCTATGTTTATCTCTTGCTTCTTCGTGTGAACGATCACGGAAC
GGTGATTTTTCCCTTTTATGATATTTCTCGTAATGATGATCTTCTTGAGAACCATTCTGA
TGCCCGCTTATCTTCATTGTTCCTTTTTGTTCATCACGACGTCGTTTTTGTTCTAAAGCT
GTTGATTCTTCTGCCCTATCCCTTTTCCGATTCATCTTACGTTCTTTACGTTCATCACCC
CTAACTTTAGTCTTCCTTTTGTCCTTGTCTGGTGACCTTTCTTCTAATTCTTTACTAGCC
TTGCCATTGCTGCTGGTTTCAATTTTACGGCGCTTTATTTCACGTTCAGCGTCATCTGAA
GTACTACGATGTTCGTGAGGAGGTGAGATTGCTTCTAAATAACTGCTTTCCTTTAGCAAA
CGTTCTTTCGGTGATCTATCTTTAGCTCGGCTTTCTTCTTTGGATCTCTCTTTAGTGGAG
GTTCGTGACTCTCGTTTGGAATCTTTATCGCGTTCGCCTTCGTCTCGGCGTCGATCGCCA
GCGCGAGCATCTCTCCTGTCATTGTCTTGTGTAGGTGTGGATGTTGGTTCAGGCTCGGTA
GCTGTTTCTTCCTTCGCAGGAGCCGTGTTAGCAGACGCAGCACTCGCCACTTTGGTTTTA
TCGCTCACTTGATGAAAATCAGCTTCCTTCATCATATTAGATGATTTGTTACGTAATTGA
CCACTGTAAACAGTTGCTAACACATACAGATCTTGTCTCTGTATTTTCTCTTCTTCTTTA
ACCTTGTCCACTTTTTTTTCGATTATTAGGCCAAGTTTAGCCAATACCGGGAAATGTGGT
AGCACCCTTATGAGAACTATAAGGGCGTTCCGTATTTGTACGTAGTCTCCAGAATCCAAG
CAAACCACCATGGCTTTGGTTATTTTGTAATGCCATTTGTGACATACGTGCCTGTAGTTC
TCATATCCGACGTGGTCGTTGGCCTCGGTGAACTGCTTGGAGACCCTGTACTTGGTGACG
AAGCCGGGGTAGTGCGCGCACTCGCGATGGAAGGCGTCCTTGTCGGCGTGCCAGCGCATC
GCCGTCGCCAGCACCTTGCACAGGAACGTGCCGTAGCGCGCCGCCTCGCCCTCCGTGCAC
GACATCACCGAGTACGTGATGTCGCAGAACAACCTATCATAGCACAGCAACGTGGAGAAA
TTAGGCGTCTTGAGCGAGTGTACGGTGTGCACGAACTCGGCGGCGTAGAGCGCGTCGGCG
GCCGTGAACACGCAACGCGGGAAGATGCAGAGCTGCATGAGGCGCGTCACGGTCTCGTTC
TTGGCGGAGCGGGCCGCGCGCGCCGGGAACCACGCCTCGCACTCGCGCGCCAGCCGCGCC
CGCACCGACGACACGTGCACGCTCTGACGACGACGCTCCTCCTGTAGTTTATCAATGAGT
GTATTGAAGCGTTCCTGTTCCTTTTTAACCTTGGTTCCTTGAGATGAATCTTTCCCAACA
TTGGCTGCTGCTAATTTTAAACGCTCTATTTCCCTTTCGTAGCTTTCAACTGGTACTCGA
AGATCATACATTGACAATGACCAGAAAGTAACATAGAACTCAGGAGAAATATCTTCCAAA
ACTCGTGCAGGTAACATTGGTTGAATTGATAATACTATTGGTTCGAGGACTTCCTTTGAT
GCAACATTATATCTTTCAATACTCTTCTCCAATGAATCTGATTTACTATCTGAGGCTTTT
CTTAATGATTCCAACTTCGCAGCAATCTTTTGATTTATAACTGGACGGTGCAGGAAAAAC
GCAACGTCCGCATCTACGTGATAATCGCGTAGCAATTCCTGTAACGGCGGCAACCTCGCA
GCATACTCATCGGGTGCATGTGACGATGCTAAAAATGTGCCAAGTTGTACTAGAGCATCC
TGGCATTGATCTGCCAACCTGCCCACTACTTTTAGTTGTGAGCCTGGAGGTTCACCACTT
ATTTGGACGTCATCTTCATATTCTTTCCATACGCAACAGTGTCGTTGTTGTGCCGCCAAT
ATACATAGAGATATATCTAGATTATTTCCTACAATAGCATCCTTTAATCTCGCCGAAGAA
CGTCGGGTGTTGCGAACTTGTGAAAAGTAACCAGCCTCTCCTTTCAATAATTCACCTCCT
GCCATGGCCTCTAATTGCTCTGGTGTCATTTCTTCAGCTGCTTCAATACCAGCCATTTTT
TGTACTATTTCTTTCAATACTATTAGGTCTTGACTTTGTTGTGCTTTGAGACGGTTGGCA
ACAAACTGCAAGAGGGCTGTCAATTCAATATTGTGTTTCTTGAATGCTGCTCCTGCAAAT
GAAGCCAGCGCTTGCAACCAAGCCGGTGGTGTCGACCTCCGTGAACCTAAGGCCTCTACT
AAACAATATCCTAGAACATCTAAAGAAAGTGAAGTCAAATATTTCATTGATTCCACTACT
GGACCTATAAGATTATCGTAGGTCTGAATCTGTAGTAGAATATAATCGAACAGGAAAGCT
GGTGCGGCGTGGGACAATTTTCCAATAAGACGACCCTGAGGTTTAATGTTTTCCTTCGAT
ACTCTTTTCATAATTTGCTTTATTTTCTGTAATGAATTTCCACGCACCCTTATTAGGGAT
GGTATCCTTTCACCTGATTCATTTTTCCAAC
(2851 bp)

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