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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11285c2_g2_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_agrin-like_[Amyelois_transitella]
Ontology
GO:0001523 P retinoid metabolic process
GO:0002162 F dystroglycan binding
GO:0005200 F structural constituent of cytoskeleton
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005605 C basement membrane
GO:0005737 C cytoplasm
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0007165 P signal transduction
GO:0007213 P G protein-coupled acetylcholine receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030054 C cell junction
GO:0030154 P cell differentiation
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0033691 F sialic acid binding
GO:0035374 F chondroitin sulfate binding
GO:0043113 P receptor clustering
GO:0043202 C lysosomal lumen
GO:0043236 F laminin binding
GO:0043395 F heparan sulfate proteoglycan binding
GO:0043547 P positive regulation of GTPase activity
GO:0045162 P clustering of voltage-gated sodium channels
GO:0045202 C synapse
GO:0045887 P positive regulation of synaptic assembly at neuromuscular junction
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0050808 P synapse organization
GO:0051491 P positive regulation of filopodium assembly
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:3.34 TPM:3.27
ORF EntryO_TrvaFAMAMG12899_complete:A_TrvaFAMAMG_TR11285c2_g2_i3
Sequence
(Nucleotide)
ACCGTCATTTGTTTTGTACTGAGTACGGATGTTGACCGGCCAATGTGGAAACGCACCTTA
AGTACTGGCGTTCAAATGTAATTCAAAGTAGTGTTCAAACTTTGGAAATGTCAAGAGCGG
GTTCAGTTTCTACTTTATTCTTAGAGAAGCATATTACAGAAGACAATCTTACTTCAATCT
TAATTAATAGGCCACTAATTCTTTAAAATTCCTTTGGCATTTATTTTCTTTTCTCTATTA
TTAAAAGTTAGATTTAATACAAACATTCATCATTAAATATTTAATATTTTAATAGATAAA
GCTAACAGAATTAAATACATTAGGAAGATCATTAATATTTAAAGTTTTTAATTTATGTTT
TTAATTATGAAAACACTACTTATAGACATAATAGATAATATAATATATACTGTACCTATG
AGGACTCAGAAAATAGCAATTTCAGAAATATCACATTGAAATCGATGTTTCTCTATTTTA
TCATTTATATTCGCTTAAGAATTCGGATAGTTTGTGTAGATGCAAAAAAAATACAAAAAT
ACTCGTTCTTCTTCTAATTCCTTGTTATACTTAACTGTCATTAGATACTTTAAAACTCAT
TATAATTTATAGTTTATACCTAAGTCAAAGAATATTACAAGCTGATTGATTTCAATAGTT
GCATCTTTAAAGAAAATCAGGGTTATTCGACAGCTGATAACTCCTAGGAATCGTAAATAT
TTTAACGACCTCAGTAACAACATATTGCTTTACTTGAAATAATAGACATTATTACAAAGT
TTATTTAGCTCTATGGTTTTCAGTTTTATACGTTAGTAGTTTTAAACATAAATTATTTAA
GGGCAAACTATTTGCGCTAAATGATGCGGAGTACAAGGTTTAATTCCATGTGTTTTAATA
ACCAGACCACGTGTGGGCGGTATCAAATCCCGTCCACTGACATGCAAACGATGAATGCAT
CCAACAAACCCACCTGCCGACAATCCTGATAGCCTCGTCACATTTTCTGGTGGATTACCA
ATATAGACAAATGGGTCTATATCTAAAGAACTCATACGACCTTTAGCCGTGCCACGAGCT
GATGTCGATCCAACTTTCAATACAGCATCTCTTTTATATTTCCTCGCTGTTATAGTAGAT
CTTCCATCCAATCTTAATTTTCCAGTGCTCAAATCCAAATGTCCACTGCCAGCATCAAAA
CGCAAAACTCCTTTCTCACGGATAAATCCTAGCCACAAATGGTCCCTCATTCCGGAAGCA
CTTAATAAGGCTCCTCCATCGCAAACGGCTGTTACTTCCGCCCATATATCGAAGTGCTTT
GCTGGCAATCGTACCCGAGCTGTCATCCTGGCGTTACCATCAAACAGTGGCAATTCATAA
GCATCTTCATATTTGTTTTCAATGTAGTCTTCATAACTGTAATCTTCAATTTCATTGACT
TCAGATTCCGAATCAACGTACGGAGCTACCGATGATTTAGCACAACGATTTTGCGAAGAA
TTGTTGGATTTATAAGAAATAGTATAGATGTTCTCTGTGAATGAATTTCCTTAGAGTTAA
AAGTAATTTTTCAGAAAAGATCTACTTCATAATCTAGCACTACTAGCGATACCCGACTGG
CGGAAGAATGTCGACACACGTTAACTCTGGCTCAGGACTATCGGGTTTACCACTGTCGCT
CGTATCTACTGAAGCGTCTGTGAATTGCAGTGAGGTGCGCTTTACGTGTTCATAATCTAG
CGTATTATCAGGTTGTGAAGGAAATATTTTTACGAGCGTTGCTCTACTGGAACGGCTACC
TCGCCGCACGTGAGGTGGTTCTTCACTGCAAGGTCCGAACGCTTGCACAACCACGTCGGA
TTGTGTTCTACAAGCATGGGTCCTTAGGTGACAAGCAGAGAGGTAGGTGCGACCGTCGCT
TCCACACACTGGAGGTTCGTCATTAACAGGACATTCGGCTGCGCTGCAATCGCAAATAGC
AAGACCACTCCGCGTCAGACAATGAGCTCCGAAATAACATGTCATGTGATCGCAACTTGT
AGCTGGCAGTTGTGTAGATTCCGGGTCGAAACATCCATTGGGGCCCAATGTGTGTTCATG
ATTTGAGCAAACAGTGCACTTTTGCCCCTGTATCCCAGGTTTACAGACACATCGCCCAGT
CATCTGTTCACAGTCTTCACGCACCGATCCAAATGCAGAACAACCACAAGGTATACAGCC
AGTATGTTGTGTCCCGATCCTAGGTAGTCCCCAGTAGCCGGGCTCGCAGCGGTCGCACTT
GAGTCCGCCCACACCGGCACGACACGAGCACTGACCACTCTCGTCACATTGCTCTTTCAC
CGAGCCCAGTCTATGACATCCACATTGGGAAGGACAACCAACACCTCCGGGACCTCTAGC
GGGAGTAACTCCATCGGCGCAACAGCCATTCCAAGTATCTTGACAGCCTTTCTTTTCTAT
GACCGTTTTGTCCTTCCTACAGCACCTAGCAGCTTTGGTAGTGTGGTGACAGTAGCTACC
AATAGGACAGTCCTTTCGATGTGGACCACCGCCGCAGTCGTAAGGACGACCATCTTTATC
AGTAAGCGGCTCATCGTCTCCACATGGTCTGAACTCTAATCCTCGACAAAGTGCAAGAGG
ACGTAGTCTCAGATCTTCTTGTCTCCGACACGACTCTAGTTTCATGTGACACAGAGTAGG
ATAAAGTCTGAGATCGGAAGCGCAGACTGGACTTGAAGTGGGAGCTGCTGCTGCCGCCGC
GCAGTCGAATAGGCAAGCGCATCTTGGTTGTCCGTTAGAGTCGACAGCGCAAGTGGCTTC
ATAAGCACATTGGACTCGAGCGCAAACCGCATTGCTCCCAGGTTCATTCACATTCTCCGT
TGCGTCCTCGGACTTGATTTCATTTGCTAGATCTGATATCGTTCCTGTTTTGTTTGAACC
AGATGTAGTATTATCGGCAGTATCAGTACATTCTCCAAAGTACGCAACTCTGAGTTGAGG
TTCAGCTCTCATCCTGGCCTCGCAAGCCGCCTTCAACAGTGCACACTCATGCGGGTAGGT
GCGTCCGTTGGTAGCACACACTGGTTCCCGGACAGCACCGGCGCACGGGGCGGCACACGA
ACATGAACCACGACCACACCACGTGCCAACGGGACACTGGATGTCCGCGCACGATTCACA
AGAACCCATATGCTTGATATGTAATCGTCTCTTTTCCTTGCAAGCGACGTCTCTTAAGGC
GCATACACTGCTATAAGTTTTATTATCGCTGCCGCAAACTTCTTCTGTTTCCGTTCCGTC
TTCGCAATGTTTTGGACAAACGCAGCTGGCTTCAGAGACACCGTCACTTTCACAAACGGC
GTAAAATTCACACTTCTTATTCTCACAGCCGTTGCAAGGTCCGTCATATAACACATGAAC
GTCCCGTCTATGCCGGCACGCTTCTAGTTGCAGCTTACACCGGTTTCCGTAGGAGATGCC
GTCAGAGCCGCAGACCGGGGCGAACTCGTTGGAGCACCGCGGACACCGGCATACACCGCG
ACCACCTGAAGCGATGCACTCGCCACCGTGGGGACAAACTCGATCAGCGCATACGCCGTT
TGACCCACAGGCTCCGGCGTGCAGAACCTTCAGTTCTCTTCCCAGTAAACAAGCAGCCCG
TCGCAGTTCGCATTCACTATCGTGGGTCCTAGAGTCAGAGCCGCAGACAGGTCTCAGCAC
GGGCTCGCAAGGCGGTGGACACGCGCACACAGCTCCTCCGCCTTCCACGCGACACTCCGC
CCCGTGACGACACTCCACTTCCGCACACGGATTCACTCCAGAACTACACTGTCCCTTAAA
AATAATCTTCAGTTGTTTTCTAGCACGACAGCTTTCACGGTGCATTTGGCATTCGTTCGA
GTATGTCTTCCCATCAGAGGCACAAACCGGGGAAAATTCTAGAGGGCAGGGCTCCGCGCA
CCGACACAGAGGTGCCCTTCGGTCGTCTAACTGACACACTTCAGGGTCAGGACAAGTTAC
TCCGGAACAGGGATCGCACTTTCCGTAGTACTTAAAAGTGATATTAGTGTTTGACTCGCA
TGCAGCTCTGCGCATCTCACATTCGCCGGAATAATCGCGAGCATCGCTGGCGCACAGAGG
ACGAGATCCCTCGTGGTCCCCGTAACTGGGACAGGACGTGGGGCACTTGCAATCGTAAGC
ACGACCGTCCGCCGTGGGACGACATAACGCTCCCGGACCGCAAGTTATTCCTTTACACGG
ATCCGGTACGTCGCTAGGGAAAAGGTAGCAACCCTTCGCAGTTGTAACGAACGCGAAAAA
TAAAATGAGATGGCAAGTGAACATCATCCGGCCAGCGAGCGTAACTCGCGCCCTTCTTTG
TCCACCATCACACATCCTATTTAGTCATTGCACCATCGTATAAGCACTTGATGCATTAAT
AATTAACGAATACCTTGATATGTCTGGTGATATCCCAAAACTTGCAGATATTTATCTTTT
CAACAAAAACACTACTTCATAAAGTTAAATAAAAAAATCAATCTAACAACCCCGAG
(4556 bp)

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