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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11280c0_g1_i5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_highwire_[Bombyx_mori]
Ontology
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008045 P motor neuron axon guidance
GO:0008270 F zinc ion binding
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0021785 P branchiomotor neuron axon guidance
GO:0021952 P central nervous system projection neuron axonogenesis
GO:0030424 C axon
GO:0032880 P regulation of protein localization
GO:0042177 P negative regulation of protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048667 P cell morphogenesis involved in neuron differentiation
GO:0051493 P regulation of cytoskeleton organization
Transcript
Level		FPKM:0.47 TPM:0.46
ORF EntryO_TrvaFAMAMG12836_5prime_partial:A_TrvaFAMAMG_TR11280c0_g1_i5
Sequence
(Nucleotide)
CGACCTTCGTACAAGACATTTTGGAATAGTTTGATATTTTATACTCCGCTGAAGATGTTA
ATTGACGAAGAGTGTAAGATAGGTATTGTATTACATGCTAAGCATCCTATCTCAGTTATA
GTTTTAAAACACTTCAGTTTCAAACTGCGCACAGATTGGTAGTGAGTCGACATCATTAAA
CTTAATTGTACTATTGATGTATTACAGTACGGAGTTTCAATTTTGTTTTGATATGCCAAC
CATGTCTTAATAAGGAGGATGTCATAAATCGTAATTTCTGAATTTATAGATAGACATTTC
AATAGCGAGAATCAATCGATATAGATGTAATAGTTTGTGTGTCTATTTATGAATTCAGAG
TGTTTAGTATTGTTGTGTGGTTAATGTTTAGAATGCTTGCGCGTGTCTGCAGATGCCGCA
TCCGAGCGCGTATTCCTCGCCGGTGGCGGGATGTTGTACGTGCAGAGGACACTCGTCAGC
AGTACCGGGCAGCTGCTCGCCTTTGGGACCGGCGGGGCACTGCGGCAGCAGGTGTCTCGG
GATGTGAGTTACGCGCTGGAAATCATCGTGGCACGCGTTGCAGAAGTGCGATGTGCCGAA
ACAGAAGAACACGGCAACCGAGCAGCAATAGCGGCACTTGTACTCGAGGAAGTCGGCTCC
GTGTTTGGCGCATGTCTTAGCGCCTGTGACGTCACTGCAGCCGCCGCAGACTAACTCGGC
CGGCTCCCACGATCCATTAAACTCGACTTCACAACGAGCCAGACCGCCGAAATATGCCTG
AACAAACACAGTTTATGTAATTAAACGAATTTTCAGAATACCTTGCAAATGGGGCACTGG
GCGAATGAGAACGTAATCCTCGGGCCGTTCCATTTGTTGGCGAGCACTTTCTTGCAGCAG
TGCAGGTGGAAAACGTGACCGCATGTAAGCTGTATAGCTGGAGCAGCTTGCAACGGATCG
GTGAAGCAAATCATGCACATGTCATCGGCGTCTTGTTTCAGTGGAGTGGTGTTCGGGGCG
CCGGGACAGCCGTGCAGGCACGGGAGGCACGTCTGCTCGTCGCGGACGCCGCCGCACAAG
TGATCGCAAGGTAACATCAGCGAACAAGCTTCGCGGCCGTGCTCCTGACACTGCTGGTCC
GAGCAAATATTCCCGATGGTGAGCAAGCCGGATGTTCCACGAGTACCGCAGAAACGGCAC
ACTCCAGAGGTCGCACTCATATCGGATGCCATAGCAGCGCTCTCATATGAAGCCCCGGCA
TCACAAACACCAGTCTCCATTCCTCGGAATTCGGCCAAAGCCTTCAGAGTGCGTCTGTCG
ACTAGAAGCAGGAGCCAAAAAAGCTTGGCGCGACCGCAGCCCTCGTGTATGTCGATACGT
ATGGCGCTTTCCTCTTCTTTGCAAATCTGACGTCGATGACTTCTAGTGGTCCGATTGAGA
TGCAAGAATCGGTCGCATTCAGCGCACAGTGGTCCGCAGGTGCGACAGTCGATAACAGCG
ACGGTAGTTCCGTCGTCGTGGTTTGTGCACCGTGGTCGCGTCTCAGAAGCCGGGTCGTTG
GCGAGATTAGTGTGATCATCGCCCGTAAGTTCGATGTGCGATTGTTCGCAAACGCACAGC
GCTGCCAGAGCCATCCATACAGTAGAGGAAGAGATGCAGCGTGTCGGGTGACGCTCCGCT
TCAGACACTTGAGATATATCGCGCACGTACTTAACGAGACTTGTACGTGTCTCTGTGCCC
CAACAGCCGCCCAGTTTATCCTCGGCCATATCAGAGAGCATTTTAGCCACAGTCTGCGCG
TGTTTCTTCGTAGTTTCTCCCTTCATGAACCAGCGGCCCGGTGGTACAGGGTTGATGCTG
CCTCCCAACATAGCAGTACCGGGCGGCAACCCGGTAGTCAATCCTTTCACCTTCACTTGC
ACTGTGATGGCCTTGCCGAGGTAGGCGATCAGGTGATCGAGTAGTGTCACTCTGGTGGTA
GGATCGGAGCCATGATTGACTGCAACGAGCATTCGCTGCGGAGACAGTTCCATTACCAAG
CGACGGATCAGCAATATTACCTGTCGTTGTACGCGTTCGCTTCCAGTGTGAAGTAGGCAT
AGCAAGTCGGCGATTAATTCAGTGCGTTGAGCGAGATGAGCTCGCCCGAAGGCACTGCCG
CTGAGCGCAAGGAGCAGTGAAAGCATTTCAAAGCAGTAGTTGTCTTGCTGCAAGCCGATG
GGCCTGGCGGCCTGATCTTCCCAGTCGTTATCGGCCATGTCAGCGCAGAGTAGAGCTGTT
TCCCAGTCGTCACGCACGCGCGCTGTCTCACATCCGATCGCTGTTACTATGTGCGCCATT
ACTTGTCGTTGCAGAGACGTGAGTTTTTGTCCAGCGAAGAGTATTCCAACGACGTGTTCC
CTGAGGTCGCTGTCATCACTCACAGAAACTTCGGTTGAGACGGCCTCACCGTCTACGTTT
AGTTTCTCCCATTCCAGAAGCTTGCCGAACACCTGCGAGGTCAACAAACGGAAGACCCTC
AAAGTGTCGGTTTCACACAATCCGTGTAAGACTTGCGCTGCGCTCGCAGCAGCAGCGCTG
AGAAGTGCGGGCACGCTGAGCGCACGCACCTGGCGTACTCGCACCGCCGCCTCCGGGCCG
CGGAGCTCGCAACGCACGTGCAGGGCGGCAGCGGCCACGCGCGGCAATGTATAGCAAATC
CAATTAGCAGTTCTAGTATCAACCTCAACGTCTTGCATGTGAACCATCTCACCGCCACCG
TTGTTATACAAAAACGACATCAGCAGAGTCTTGTTCGCAGTATCTCTTGTGTTATCGACG
TGCACGCTTATGATATGCGGGCGATCGTCACGTGACCCTCCCGGGTAAGAGATCTGTATC
CACTTGGCCTTGTTGCGGTCTTCGTCTCCGGACTCCCAGAAGGTCTCAGTGCTTCCGTCG
GTGAGCGCGCCGGCCATGCCTTGTCGTGAGGAGACTGTGACGTCACACCAGCCCGTCACG
TCGTTCGAACTCCACACGTGGTTCTCCTTGAGATAGCTATGGAAGCTATCATTAACGGCG
CCATGCATTCCCTCCTCGTGTACGCCTTCCTCGGAACGAGACAGAATTTTGCTGATCACA
CTGAATACTTGCGATCTGTGCAAGAAAGCGCGATCGTGCGTCGAGTAGTCAAGCGCCCAG
CATCGCACGGCCTGCAGGCTAGCGGCGCTCGCGTGCGGCAGGGACGGAGCGAGGGTGCTC
ACCGAGCCCAGGAACGAGTGGAATGCGGCCCTGGAACCGCGCGCTGCAAGACCGCCCGGA
CATATGGCGGACGTGGACGCAGTCGGTGATATTATACGGATAGGCTCGGCTGATGCGTTC
TCTCCCTCTCTGTTTTCTTCAATTATTGGAGGCGGTGGTACAATGTGAGAGAATTTCTCC
GCAGCGTTACAGAACCACCACATCACGTCGTGGGCGCATATCGGCTGGGTAGCCGAACGA
AGAAGCCAATTCATTGCCTCAAACGCGTACTGTCTAACAATGTTAATCCTGACAGCGGCA
TCCATCTTCTCCCTCTGAACGGCGAGGTCTCGTTTAGCGAGCACAAAGCTCAACACAGGT
CTGTCCATGATCGCCTTCGAGTCAAGTCGTGGCGCTTCGAAGGCTGATAGAGAATTTTCA
GCGTTGCCAGCATCACCTCCACAGATGAGGTTCTTAAGCGCCTTGCTGGGTTCGGCTAAC
AGTGATAATCCAGATCCGGATCCAGGTGGTGGTGGATCGGTCGGAACGATATTGCGTACG
AGTGGCGGTCGTGCTGCGGCTGCCAGGTCTCCACCGGCCTGCCCCATGGACACGGATCGA
GGCACTCTGGCTAAAGACGAGGGTCCTGGGCCAGACTCTGGCATCGGGAAGTTCGGTCCA
GCAGCCGCAGATGTAGAAGCTGCAGACGGCTGCGGTCGTCCCAGCGAGTGGTATCTAGCT
GGCGCGGCGGCCTCGTTCGTCTGTTGAGGCTCGATGAGGGCCCTCAGGCACTGGAAGTGA
GGCGCCGGCTGCCACACGCTCGCCGGTGACGTCATCGCACCGCGGTTCAGTACCTCGCTC
AACGGTGATGCAGCTGATATCGGCTCTGAGTCAGTGAGCGGAGCCAAGTCGAGTAAGAAC
ATAGCATTTTCCTTCATTACGTTGTGGTCAACTCCGGGGATCATGTCGAGATGTTCAGTA
GACATGGTCATCGATGACGCAGACGATTTGGACGCCAACCACGAGTCGCGGCACTTCTCG
CACAGAATGTACCAAAGCTCTTGAACTTGTACAGTTTGTCCGCAAGCAGTCCCGAACGGT
TCATTGGGCGGTTGTTCTGCCTCCCTATATACTCCGGTGCGGTCGTATCCATGTTGAGTG
TTAGCTCGACATCCCCTGTGCGCGTTCCGCATGTGTGCGGAGAGAGGCGGGGGCACGTTC
GCACCGCCGCACAACTCGCATTGCACTACGTACGGAACCTTGTTCAGTTGACGACGGACG
ACGCCGCGTTTAATGCGAACAAGTAGCGGACGCACTTCCTCGGCTGGTGGCTTGTCGATT
ACTTCACGCATTTTCTTATCAGTAGCAGCGGTAAGTTGATCTGCTTCATAAAGGGCGTCC
CACAGGGCGACTAATGCACGTAATGCGGGCGGCAGTACGTTCACCACAGATTGCGAATTG
GATGGATCTGAGGTGCTGCAATGTGGCTGCACATCGTCTTCGTTAATCGCGACGTCGACT
TCAGCTTTGCGCTTGCGACTCTCGCTGGCTTCCTTACCGGAACGAGTCAGTGTCTCCAAT
GTTGACGGATTTATGTTCAGATATTGACCTGTGCAGGTGACTTCAACTGAGTGTCTCTGG
TTGTGAGATGGATTGTAGTCGTCGGACTTCCTTGTCACTACGCGAGTACCTTGCTTCGGT
AGTTGAGGATGGAACTTCAGGAATGCCGCGCAAGCTATTGCGTCGTGGACGATACCTTCA
TGCCACAAGAGCGCTGCGAATATGGCCCGCAGTGCTTCAGCCTGCGAGGGGCTGAGCGCG
TGTTTCTTGGCGGGCGGCGGGGCGGAC
(5067 bp)

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