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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR11280c0_g1_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_highwire_[Bombyx_mori]
Ontology
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0008045 P motor neuron axon guidance
GO:0008270 F zinc ion binding
GO:0015630 C microtubule cytoskeleton
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0021785 P branchiomotor neuron axon guidance
GO:0021952 P central nervous system projection neuron axonogenesis
GO:0030424 C axon
GO:0032880 P regulation of protein localization
GO:0042177 P negative regulation of protein catabolic process
GO:0042803 F protein homodimerization activity
GO:0046872 F metal ion binding
GO:0048667 P cell morphogenesis involved in neuron differentiation
GO:0051493 P regulation of cytoskeleton organization
Transcript
Level		FPKM:2.88 TPM:2.82
ORF EntryO_TrvaFAMAMG12825_5prime_partial:A_TrvaFAMAMG_TR11280c0_g1_i3
Sequence
(Nucleotide)
CGACCTTCGTACAAGACATTTTGGAATAGTTTGATATTTTATACTCCGCTGAAGATGTTA
ATTGACGAAGAGTGTAAGATAGGTATTGTATTACATGCTAAGCATCCTATCTCAGTTATA
GTTTTAAAACACTTCAGTTTCAAACTGCGCACAGATTGGTAGTGAGTCGACATCATTAAA
CTTAATTGTACTATTGATGTATTACAGTACGGAGTTTCAATTTTGTTTTGATATGCCAAC
CATGTCTTAATAAGGAGGATGTCATAAATCGTAATTTCTGAATTTATAGATAGACATTTC
AATAGCGAGAATCAATCGATATAGATGTAATAGTTTGTGTGTCTATTTATGAATTCAGAG
TGTTTAGTATTGTTGTGTGGTTAATGTTTAGAATGCTTGCGCGTGTCTGCAGATGCCGCA
TCCGAGCGCGTATTCCTCGCCGGTGGCGGGATGTTGTACGTGCAGAGGACACTCGTCAGC
AGTACCGGGCAGCTGCTCGCCTTTGGGACCGGCGGGGCACTGCGGCAGCAGGTGTCTCGG
GATGTGAGTTACGCGCTGGAAATCATCGTGGCACGCGTTGCAGAAGTGCGATGTGCCGAA
ACAGAAGAACACGGCAACCGAGCAGCAATAGCGGCACTTGTACTCGAGGAAGTCGGCTCC
GTGTTTGGCGCATGTCTTAGCGCCTGTGACGTCACTGCAGCCGCCGCAGACTAACTCGGC
CGGCTCCCACGATCCATTAAACTCGACTTCACAACGAGCCAGACCGCCGAAATATGCCTT
GGTGCACTTATGGCAGACGTAATAGGCGTAACGTTCCATGGCGTACGCAACGGGGTCGAC
AATGTTGCGTCCCTTCACACCGCCCGGTGTAGCGAGTCCTTCATACTCGAGTCTCATCAG
CGCCTTGCGTTTCACCTCGTCGCGGAGCTGACGGATGGGATGTAGCAGCTCCTCGAGAGT
CCAGTGGTTGATTTCCTCCTTGCAAATGGGGCACTGGGCGAATGAGAACGTAATCCTCGG
GCCGTTCCATTTGTTGGCGAGCACTTTCTTGCAGCAGTGCAGGTGGAAAACGTGACCGCA
TGTAAGCTGTATAGCTGGAGCAGCTTGCAACGGATCGGTGAAGCAAATCATGCACATGTC
ATCGGCGTCTTGTTTCAGTGGAGTGGTGTTCGGGGCGCCGGGACAGCCGTGCAGGCACGG
GAGGCACGTCTGCTCGTCGCGGACGCCGCCGCACAAGTGATCGCAAGGTAACATCAGCGA
ACAAGCTTCGCGGCCGTGCTCCTGACACTGCTGGTCCGAGCAAATATTCCCGATGGTGAG
CAAGCCGGATGTTCCACGAGTACCGCAGAAACGGCACACTCCAGAGGTCGCACTCATATC
GGATGCCATAGCAGCGCTCTCATATGAAGCCCCGGCATCACAAACACCAGTCTCCATTCC
TCGGAATTCGGCCAAAGCCTTCAGAGTGCGTCTGTCGACTAGAAGCAGGAGCCAAAAAAG
CTTGGCGCGACCGCAGCCCTCGTGTATGTCGATACGTATGGCGCTTTCCTCTTCTTTGCA
AATCTGACGTCGATGACTTCTAGTGGTCCGATTGAGATGCAAGAATCGGTCGCATTCAGC
GCACAGTGGTCCGCAGGTGCGACAGTCGATAACAGCGACGGTAGTTCCGTCGTCGTGGTT
TGTGCACCGTGGTCGCGTCTCAGAAGCCGGGTCGTTGGCGAGATTAGTGTGATCATCGCC
CGTAAGTTCGATGTGCGATTGTTCGCAAACGCACAGCGCTGCCAGAGCCATCCATACAGT
AGAGGAAGAGATGCAGCGTGTCGGGTGACGCTCCGCTTCAGACACTTGAGATATATCGCG
CACGTACTTAACGAGACTTGTACGTGTCTCTGTGCCCCAACAGCCGCCCAGTTTATCCTC
GGCCATATCAGAGAGCATTTTAGCCACAGTCTGCGCGTGTTTCTTCGTAGTTTCTCCCTT
CATGAACCAGCGGCCCGGTGGTACAGGGTTGATGCTGCCTCCCAACATAGCAGTACCGGG
CGGCAACCCGGTAGTCAATCCTTTCACCTTCACTTGCACTGTGATGGCCTTGCCGAGGTA
GGCGATCAGGTGATCGAGTAGTGTCACTCTGGTGGTAGGATCGGAGCCATGATTGACTGC
AACGAGCATTCGCTGCGGAGACAGTTCCATTACCAAGCGACGGATCAGCAATATTACCTG
TCGTTGTACGCGTTCGCTTCCAGTGTGAAGTAGGCATAGCAAGTCGGCGATTAATTCAGT
GCGTTGAGCGAGATGAGCTCGCCCGAAGGCACTGCCGCTGAGCGCAAGGAGCAGTGAAAG
CATTTCAAAGCAGTAGTTGTCTTGCTGCAAGCCGATGGGCCTGGCGGCCTGATCTTCCCA
GTCGTTATCGGCCATGTCAGCGCAGAGTAGAGCTGTTTCCCAGTCGTCACGCACGCGCGC
TGTCTCACATCCGATCGCTGTTACTATGTGCGCCATTACTTGTCGTTGCAGAGACGTGAG
TTTTTGTCCAGCGAAGAGTATTCCAACGACGTGTTCCCTGAGGTCGCTGTCATCACTCAC
AGAAACTTCGGTTGAGACGGCCTCACCGTCTACGTTTAGTTTCTCCCATTCCAGAAGCTT
GCCGAACACCTGCGAGGTCAACAAACGGAAGACCCTCAAAGTGTCGGTTTCACACAATCC
GTGTAAGACTTGCGCTGCGCTCGCAGCAGCAGCGCTGAGAAGTGCGGGCACGCTGAGCGC
ACGCACCTGGCGTACTCGCACCGCCGCCTCCGGGCCGCGGAGCTCGCAACGCACGTGCAG
GGCGGCAGCGGCCACGCGCGGCAATGTATAGCAAATCCAATTAGCAGTTCTAGTATCAAC
CTCAACGTCTTGCATGTGAACCATCTCACCGCCACCGTTGTTATACAAAAACGACATCAG
CAGAGTCTTGTTCGCAGTATCTCTTGTGTTATCGACGTGCACGCTTATGATATGCGGGCG
ATCGTCACGTGACCCTCCCGGGTAAGAGATCTGTATCCACTTGGCCTTGTTGCGGTCTTC
GTCTCCGGACTCCCAGAAGGTCTCAGTGCTTCCGTCGGTGAGCGCGCCGGCCATGCCTTG
TCGTGAGGAGACTGTGACGTCACACCAGCCCGTCACGTCGTTCGAACTCCACACGTGGTT
CTCCTTGAGATAGCTATGGAAGCTATCATTAACGGCGCCATGCATTCCCTCCTCGTGTAC
GCCTTCCTCGGAACGAGACAGAATTTTGCTGATCACACTGAATACTTGCGATCTGTGCAA
GAAAGCGCGATCGTGCGTCGAGTAGTCAAGCGCCCAGCATCGCACGGCCTGCAGGCTAGC
GGCGCTCGCGTGCGGCAGGGACGGAGCGAGGGTGCTCACCGAGCCCAGGAACGAGTGGAA
TGCGGCCCTGGAACCGCGCGCTGCAAGACCGCCCGGACATATGGCGGACGTGGACGCAGT
CGGTGATATTATACGGATAGGCTCGGCTGATGCGTTCTCTCCCTCTCTGTTTTCTTCAAT
TATTGGAGGCGGTGGTACAATGTGAGAGAATTTCTCCGCAGCGTTACAGAACCACCACAT
CACGTCGTGGGCGCATATCGGCTGGGTAGCCGAACGAAGAAGCCAATTCATTGCCTCAAA
CGCGTACTGTCTAACAATGTTAATCCTGACAGCGGCATCCATCTTCTCCCTCTGAACGGC
GAGGTCTCGTTTAGCGAGCACAAAGCTCAACACAGGTCTGTCCATGATCGCCTTCGAGTC
AAGTCGTGGCGCTTCGAAGGCTGATAGAGAATTTTCAGCGTTGCCAGCATCACCTCCACA
GATGAGGTTCTTAAGCGCCTTGCTGGGTTCGGCTAACAGTGATAATCCAGATCCGGATCC
AGGTGGTGGTGGATCGGTCGGAACGATATTGCGTACGAGTGGCGGTCGTGCTGCGGCTGC
CAGGTCTCCACCGGCCTGCCCCATGGACACGGATCGAGGCACTCTGGCTAAAGACGAGGG
TCCTGGGCCAGACTCTGGCATCGGGAAGTTCGGTCCAGCAGCCGCAGATGTAGAAGCTGC
AGACGGCTGCGGTCGTCCCAGCGAGTGGTATCTAGCTGGCGCGGCGGCCTCGTTCGTCTG
TTGAGGCTCGATGAGGGCCCTCAGGCACTGGAAGTGAGGCGCCGGCTGCCACACGCTCGC
CGGTGACGTCATCGCACCGCGGTTCAGTACCTCGCTCAACGGTGATGCAGCTGATATCGG
CTCTGAGTCAGTGAGCGGAGCCAAGTCGAGTAAGAACATAGCATTTTCCTTCATTACGTT
GTGGTCAACTCCGGGGATCATGTCGAGATGTTCAGTAGACATGGTCATCGATGACGCAGA
CGATTTGGACGCCAACCACGAGTCGCGGCACTTCTCGCACAGAATGTACCAAAGCTCTTG
AACTTGTACAGTTTGTCCGCAAGCAGTCCCGAACGGTTCATTGGGCGGTTGTTCTGCCTC
CCTATATACTCCGGTGCGGTCGTATCCATGTTGAGTGTTAGCTCGACATCCCCTGTGCGC
GTTCCGCATGTGTGCGGAGAGAGGCGGGGGCACGTTCGCACCGCCGCACAACTCGCATTG
CACTACGTACGGAACCTTGTTCAGTTGACGACGGACGACGCCGCGTTTAATGCGAACAAG
TAGCGGACGCACTTCCTCGGCTGGTGGCTTGTCGATTACTTCACGCATTTTCTTATCAGT
AGCAGCGGTAAGTTGATCTGCTTCATAAAGGGCGTCCCACAGGGCGACTAATGCACGTAA
TGCGGGCGGCAGTACGTTCACCACAGATTGCGAATTGGATGGATCTGAGGTGCTGCAATG
TGGCTGCACATCGTCTTCGTTAATCGCGACGTCGACTTCAGCTTTGCGCTTGCGACTCTC
GCTGGCTTCCTTACCGGAACGAGTCAGTGTCTCCAATGTTGACGGATTTATGTTCAGATA
TTGACCTGTGCAGGTGACTTCAACTGAGTGTCTCTGGTTGTGAGATGGATTGTAGTCGTC
GGACTTCCTTGTCACTACGCGAGTACCTTGCTTCGGTAGTTGAGGATGGAACTTCAGGAA
TGCCGCGCAAGCTATTGCGTCGTGGACGATACCTTCATGCCACAAGAGCGCTGCGAATAT
GGCCCGCAGTGCTTCAGCCTGCGAGGGGCTGAGCGCGTGTTTCTTGGCGGGCGGCGGGGC
GGAC
(5224 bp)

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