SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR10742c1_g1_i6
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_nesprin-1-like_isoform_X2_[Bombyx_mori]
Ontology
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
Transcript
Level		FPKM:18.00 TPM:17.64
ORF EntryO_TrvaFAMAMG12236_complete:A_TrvaFAMAMG_TR10742c1_g1_i6
Sequence
(Nucleotide)
CCGGCCGCAAGGACGTTTACGGAGCCAAATAAAAACCCGCGAACAAAAAAAAACGAAATC
CGAAATCGAAAATTACGAAATTTAAAAATAGAATTCGAAAATGGCGCTTTAGTTTTAAAG
AAAAACCGCGCGCTTCTTGTCTGAAGACTACACAAGAAATAGACAAGAAATATTTTTTAA
TCAATTTACCCTCACGTTATTTTATTGACTAAAATTTTAAAATCGATGTTTTAAATTTAC
GAACGGTGCTAATCATAACTGTCCTTGTCAAAATGTGAGATATGATTTGTTGTTTTTTAT
TATTATAGTGATGTGATAAGAAATATGTGTCAGTGGTATAAGTTGTGATTTATCGTTTGA
AAATGTCACTTCAAGAGGCATGCTTGGAACACGAAGCCAAAGTAGCTGAGCTTCGGTCTT
TGGCAGCAAGAGTTGCCGCGGAGACTGGATCCAGGGCTCTTCAGGCAGACGCTGATGCAC
TAGCTCGAAGACTACAGCTGGTAGCCGGTGCTGTCCAGGTCCTGGCTGACCTGGGTGAGG
CCAGACAGATCGCGAGGGCTAAGGCACAACACGCTAAGGAGAAGCTTTGTGATATGAGAC
AGGACCTGGCTCCACTGCACGAAGATGGAGAAATCGTTGAAGATAAACTGATAGCTTTAC
GAGAAAATCTCATAGCTTTGGGTAAGAGTGAGGCAGACATCGCCCCGGCTACTGCAGAAC
TGCCCGACATCGATAGAGACGTTTCAGATGAACATTCCATTGTTAGGATTCTGGAACTAT
GGCAGGCTATGTTCAGAGACACCTTCCTTCATTACCACAGATTGTCGACGGCTCTAGTCA
GGTCTGGAGACGCGGCCACTGCCCTCAGACTGTGGCACGAGTACTTAATAGACCTACAAT
CATTCCTGTCAAGTGGAGTTCCAGCTGACTATGAAAACTTAACGGAGCACAGGCGGCTCT
GTAGAGTTCATAGGAACTTGCTTACGTCACAACGGTCAGTACTCATAAATGAGAATAGAG
ATACCAAAAACAAAGACCTGGCTGACAAATTCGATACTCTCACCAACCTCCACAACGAGA
CCCTAGCGAGAATCGTTGAGAGACACGATGAAGTATGCACACGTATTGCCGCCTGGGACG
ATTACAGAGAAGTCTACACTGAGTTGTTGAGGTGGCTCAAAGAAATGGAACGTGAAAAGG
AAAAGCTACAACTCAGATACGTTCACATGAAGAGGATAAACAAGATCTTATCCAAAATAC
AGAATCTCGCTGACAAAGTACCCGAGGGCCGCAAACAGTCAGAAAAACTTCTAGTCAATC
TCAAAAAAGTACTGCAATTCACAGAAGAGGCGTACGGCGCATCAGTCAAAATGGAATACG
CTGGAACCGTGAAGAGAGTCGAGAATTTACAGGCCAGTCTAGACACGTGGAGAGACTTTT
TAACTCGAATATTAGGACTAATTGGTGAATACGAACATTTGACTAGCGACTTACACAAAA
TGTACGCAAAGACACAAGACGAGATTATTTCGTACTCGGACGAGGAGAAATTATCTCGAC
CTCAACTCAAGAAGATCATTGAAAAATTCACAGACCTAAGAACAAAGATTGAAAAGACCG
AATCACAGATTGAGGCTTTAAGTGTCATTCAGGAACAACTTAAAGAGTGTCTCAGCCCTC
AGGACATGAGGATAGTAAACCAAAAAATATGGCAACTGCGACAACAACGAGCTGACCTAG
AACATCAACTGTCCATCATCATTCATAGACTGCAAGAACGTCTAGAAATTTACAGCATAT
TTGATACCAGATTAAAACGATTCTCAGAATGGATCACAACTGTCGAATCACGAGTAGAAA
CATCAAGTAGCAGCAGTGAAATCAGTGCTTTAGATCCCCACGATTTAATCAGAAGGCTAA
ACGCTGATGTTCAAGCAGAAACAGCTATGAAGGAACGTGAATTCGAATGGCTCTCTGAAA
CAGGAAGTTCTCTTGTGGAAATATCTAAGAAAGAGGAAAAGTCGTACAGCAAAAACACCT
CCAAACAACTCAAAGATGTCGAAGAAAGATGGCGTAAACTTCAAGAGACTGGCAGATCAA
GAGTTGTTAAAATCACGGAATTACTACAGACTATAACTCAACTCGAAGAAAGATTGACTG
AGATCAGAATAAAATTACATGTGATAGAATCTAGATTGACTACTACTGTCGTTTTAGAAC
ATCTGACGACAAAGAGCGTAGACGAGAAGTTCAAAGAACGGGATGATACACATAAAGAGA
TTGAAGGCGAAAGCGGAGAAGTATGTGAGACTTTGAACCTCTGCGACCTTGTATTTAATG
ACCCTGACGTTCTCAAAGGCAACTTCGACCTCAGAAATCTAAGAACCGGCGTAGACATCG
TTGAAAAGAAATGGAAGAACATTTGCGACACTTCAGAACAACGAAAGAACGCATTAAAAG
AAATTCGCAAATCAGCCGAACTGTCGTCATCGCTGCTACCCAAAATAGTAAAGAAATTAG
ACTCGATCGAGAAAAGAGTTGAAAAAATCGAGACCAGAAAACAGCGGGGAGAACATGAAG
ACGAAACGGTTTCCAAAGCTGTGATCAAAGACTTGGAGGCGCTGGAACCTAATGTTAAGA
AATTGGAAGATGCCTATAGTCGTGTGGCGTCTGCTAGAGGCATAGAACTCCGTGGCCAAG
GGGCAGATGAAGCAGCCAAGTTGCGGTCAGCGATACGCCGGTGGCAACAACTCAGAGGTA
GAGTGGACGCGGCCGCTGCTGATGTCCACAGGCAGTTTGTAGCTGCACATGGAAAGGCAG
TCGTTGCTTTGGCTGAAACCGACGTCAGATTGACAAGAGCACTCCATCTTGCTCCAACGC
CGTTGGACAAAGAAGCCACCTTGAAGGAGCTTGAGGTCGTAGAAAGAGAGTTAGCAGAAT
GCCAAGCTTTAGTCGAAGATGCGGATCGCTTGGCCCTCGCTGTGTCCACTATACAGGGTG
TCTCGGAGATGGTCGCCGAGTACCGCGCTCTGTACGCTGATGTTAGACTGAGACTAGACC
TGGCTAGAGCTGAGGTCGTCGGTGATGTCGATACTGCAGTACAAGTCGATACCCTCAAAT
GGGAGACAGACGCTGCCCTGCAAGTAGACACCCTCACATCCAAAGAGACATACCGAGTGG
AACTGGCTTCAGCCGCCAGAGAAACATCAGATGCTCTCGAAGCACTCCGACTTGCACTAC
AACAACAGCCTAAAGAAAACGCCAGTAGTGATGAGTTGGCCACAGCAGCCAAGGACATCG
CCAAGGCTGGAGCCAAACCTGGCCAAACATTGGAGTTGGCCAAACACTTATCCGAACTAT
TACTAACTGAATGTGACGCTAACGAAGAAGAAGCCATGATGAAAGAAGTGGAATCTCTTT
CTTTGAGATACGAAGATCTGTTAACTCAAGCCAAGAAGAGAGAACTACAAATTAATAACT
TGAGCGAGTCCGGTCGATTGACCTGTCCTCTGTGCTCGGAGCGGAATTGGAAACAGCTTG
ACAATGACCTGTGGAGGCTGGAACAGTGGCTTCAGTTCGCTGAGGCTACAGAAGCATCTA
GAACGGACCCGCCTGAGCAGTATGATTTGTTGGAGGACGCTATACAGGACCACCGCGAAT
TCCTCCTAGACCTCGACTCGCACAAGTCCATCGTGGTATCCCTAAACGTGGTGGGTAGTC
ACGTGGCCGCGCACGCACACGACGCACGAGACGCCGCGCGTGTCAGAGCGCGTCTCGCCG
CCGCAAACGCGCGCTGGGACCACGCTTGTACGAACGCGGCTGAGAGGCAGAAGCTTTTGC
AGCACGCTTTGGTGCATAATAGACAGTTCCATGATATAGTGGTCGAATTAGTCGCCCAAC
TAGCGTCAGCGGAACGCGGCGTCCGCGCGCGCGAACCGCTGCGTTTATCACGCCCGGCCG
AGGAACTACAACGTGACTTCAGACGGTTCAGTGAACTGCGCGACGAGCTGCAGCGAGCCG
AGCCGCGAGTACACGCGTTACATGACGCCGCTCAGTTGTTACGGACGGGCGACGCACCAC
CTAATGCTGATGATATCTGTCGCAGACTAGCGGAACTTCGTCTCCGTCTCCAATCCCTCC
GCAAGCTATCCGGTGTGTACGCACTGAAGCTCGGCGCCGCACTGGCGCGACGACCCGCGC
GACCCACTACCGCGCTCGCAGCCGTCGCACTCGCCGCCGCACCACAGTTAATGGAGGAGG
AGGACGAAGAATTATCGACAATGAACCTGCCTCCGTTCGACGAAAACGAGATGGTGGAAA
TAGATGAGGCGGGCGAAGCGGAGACCCTAACCGGCATGCAGCGGGGACTCCGGTTTGTGT
GTCGAGTGGCGCGCGCCTCCCTTCCCTTCCAGGCGCTACTGTTACTAGTGCTAGGGGCCG
CCGCTCTCGCCCCCCACGCCAGGACAGAGTGCCGCTCGGGACTGGGACTGGAACCCATGC
TAAGATATCCGCATGGACCACCACCGCTGTGATCTAAACAACACTACACTAGATATTTAT
CTCAAAATAAAGTCTATACTCGAAAAGACAACACCAAACTATGATTTAACTTGAGTGTAC
TATTTTAAATTAAATTATATTTGCAATTATCCGCCAAAACTCTCAGAATTGCTCTACGGT
AAACGAACCGCGATAGTGCCGCGTATCTCATGAAACGCGCGTCATTATCGCACTAAAACG
CCCGCTTCCCTCTAGGCGGGCGTTTTGAGCGCTTTCGTCGCCGCGTTATTAAAAACGCTG
CGTTCGAGGGCGCTATTGTGACATTCCAATGTAAGTCTCCTTGACCGCCGCCTGCGCCCT
GTAAATAACAGTTTTGTATATTTGTTACGATGGAATATTTGATACGATTGAGTTGCAGAC
GATTGTCGAGGAGACATCAACCGAAAATGAACGTTAATGATAAATTATTTATATGTAACG
TGTCCGTGTAAGTGACGCCGCACAAACGATATTTATAAACGGCTTAGATACGCTAAAACA
CGCATTGTTACTTAATAGATATTAAGGACTGTTTGTAAAGTCAATAAAAGCCTATGCATT
GATTAAAAAAAAAAAGACATGCCCG
(5125 bp)

- SilkBase 1999-2023 -