SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR10742c1_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_nesprin-1-like_isoform_X3_[Bombyx_mori]
Ontology
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005521 F lamin binding
GO:0005634 C nucleus
GO:0005635 C nuclear envelope
GO:0005640 C nuclear outer membrane
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0005856 C cytoskeleton
GO:0006997 P nucleus organization
GO:0007030 P Golgi organization
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0030017 C sarcomere
GO:0031965 C nuclear membrane
GO:0034993 C meiotic nuclear membrane microtubule tethering complex
GO:0040023 P nuclear migration
GO:0042692 P muscle cell differentiation
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0044822 F RNA binding
GO:0045211 C postsynaptic membrane
GO:0051015 F actin filament binding
GO:0090286 P obsolete cytoskeletal anchoring at nuclear membrane
GO:0090292 P nuclear matrix anchoring at nuclear membrane
Transcript
Level		FPKM:2.85 TPM:2.79
ORF EntryO_TrvaFAMAMG12226_complete:A_TrvaFAMAMG_TR10742c1_g1_i4
Sequence
(Nucleotide)
CCGGCCGCAAGGACGTTTACGGAGCCAAATAAAAACCCGCGAACAAAAAAAAACGAAATC
CGAAATCGAAAATTACGAAATTTAAAAATAGAATTCGAAAATGGCGCTTTAGTTTTAAAG
AAAAACCGCGCGCTTCTTGTCTGAAGGTCACTTGAAAAATCTTGGTCGTGTGTATAATTT
CGATTGAAAATTATACGATTAGAGGTTAAATGTGTACTATAGTTAACCTTGAAATACAAG
CGTGACATCAATGTTAACTAAAGGGTTCCAAAATTGAAAAACACAACGAATTTTCATTGT
TTTTGACCTTCGAGTGTCCACAGACTACACAAGAAATAGACAAGAAATATTTTTTAATCA
ATTTACCCTCACGTTATTTTATTGACTAAAATTTTAAAATCGATGTTTTAAATTTACGAA
CGGTGCTAATCATAACTGTCCTTGTCAAAATGTGAGATATGATTTGTTGTTTTTTATTAT
TATAGTGATGTGATAAGAAATATGTGTCAGTGGTATAAGTTGTGATTTATCGTTTGAAAA
TGTCACTTCAAGAGGCATGCTTGGAACACGAAGCCAAAGTAGCTGAGCTTCGGTCTTTGG
CAGCAAGAGTTGCCGCGGAGACTGGATCCAGGGCTCTTCAGGCAGACGCTGATGCACTAG
CTCGAAGACTACAGCTGGTAGCCGGTGCTGTCCAGGTCCTGGCTGACCTGGGTGAGGCCA
GACAGATCGCGAGGGCTAAGGCACAACACGCTAAGGAGAAGCTTTGTGATATGAGACAGG
ACCTGGCTCCACTGCACGAAGATGGAGAAATCGTTGAAGATAAACTGATAGCTTTACGAG
AAAATCTCATAGCTTTGGGTAAGAGTGAGGCAGACATCGCCCCGGCTACTGCAGAACTGC
CCGACATCGATAGAGACGTTTCAGATGAACATTCCATTGTTAGGATTCTGGAACTATGGC
AGGCTATGTTCAGAGACACCTTCCTTCATTACCACAGATTGTCGACGGCTCTAGTCAGGT
CTGGAGACGCGGCCACTGCCCTCAGACTGTGGCACGAGTACTTAATAGACCTACAATCAT
TCCTGTCAAGTGGAGTTCCAGCTGACTATGAAAACTTAACGGAGCACAGGCGGCTCTGTA
GAGTTCATAGGAACTTGCTTACGTCACAACGGTCAGTACTCATAAATGAGAATAGAGATA
CCAAAAACAAAGACCTGGCTGACAAATTCGATACTCTCACCAACCTCCACAACGAGACCC
TAGCGAGAATCGTTGAGAGACACGATGAAGTATGCACACGTATTGCCGCCTGGGACGATT
ACAGAGAAGTCTACACTGAGTTGTTGAGGTGGCTCAAAGAAATGGAACGTGAAAAGGAAA
AGCTACAACTCAGATACGTTCACATGAAGAGGATAAACAAGATCTTATCCAAAATACAGA
ATCTCGCTGACAAAGTACCCGAGGGCCGCAAACAGTCAGAAAAACTTCTAGTCAATCTCA
AAAAAGTACTGCAATTCACAGAAGAGGCGTACGGCGCATCAGTCAAAATGGAATACGCTG
GAACCGTGAAGAGAGTCGAGAATTTACAGGCCAGTCTAGACACGTGGAGAGACTTTTTAA
CTCGAATATTAGGACTAATTGGTGAATACGAACATTTGACTAGCGACTTACACAAAATGT
ACGCAAAGACACAAGACGAGATTATTTCGTACTCGGACGAGGAGAAATTATCTCGACCTC
AACTCAAGAAGATCATTGAAAAATTCACAGACCTAAGAACAAAGATTGAAAAGACCGAAT
CACAGATTGAGGCTTTAAGTGTCATTCAGGAACAACTTAAAGAGTGTCTCAGCCCTCAGG
ACATGAGGATAGTAAACCAAAAAATATGGCAACTGCGACAACAACGAGCTGACCTAGAAC
ATCAACTGTCCATCATCATTCATAGACTGCAAGAACGTCTAGAAATTTACAGCATATTTG
ATACCAGATTAAAACGATTCTCAGAATGGATCACAACTGTCGAATCACGAGTAGAAACAT
CAAGTAGCAGCAGTGAAATCAGTGCTTTAGATCCCCACGATTTAATCAGAAGGCTAAACG
CTGATGTTCAAGCAGAAACAGCTATGAAGGAACGTGAATTCGAATGGCTCTCTGAAACAG
GAAGTTCTCTTGTGGAAATATCTAAGAAAGAGGAAAAGTCGTACAGCAAAAACACCTCCA
AACAACTCAAAGATGTCGAAGAAAGATGGCGTAAACTTCAAGAGACTGGCAGATCAAGAG
TTGTTAAAATCACGGAATTACTACAGACTATAACTCAACTCGAAGAAAGATTGACTGAGA
TCAGAATAAAATTACATGTGATAGAATCTAGATTGACTACTACTGTCGTTTTAGAACATC
TGACGACAAAGAGCGTAGACGAGAAGTTCAAAGAACGGGATGATACACATAAAGAGATTG
AAGGCGAAAGCGGAGAAGTATGTGAGACTTTGAACCTCTGCGACCTTGTATTTAATGACC
CTGACGTTCTCAAAGGCAACTTCGACCTCAGAAATCTAAGAACCGGCGTAGACATCGTTG
AAAAGAAATGGAAGAACATTTGCGACACTTCAGAACAACGAAAGAACGCATTAAAAGAAA
TTCGCAAATCAGCCGAACTGTCGTCATCGCTGCTACCCAAAATAGTAAAGAAATTAGACT
CGATCGAGAAAAGAGTTGAAAAAATCGAGACCAGAAAACAGCGGGGAGAACATGAAGACG
AAACGGTTTCCAAAGCTGTGATCAAAGACTTGGAGGCGCTGGAACCTAATGTTAAGAAAT
TGGAAGATGCCTATAGTCGTGTGGCGTCTGCTAGAGGCATAGAACTCCGTGGCCAAGGGG
CAGATGAAGCAGCCAAGTTGCGGTCAGCGATACGCCGGTGGCAACAACTCAGAGGTAGAG
TGGACGCGGCCGCTGCTGATGTCCACAGGCAGTTTGTAGCTGCACATGGAAAGGCAGTCG
TTGCTTTGGCTGAAACCGACGTCAGATTGACAAGAGCACTCCATCTTGCTCCAACGCCGT
TGGACAAAGAAGCCACCTTGAAGGAGCTTGAGGTCGTAGAAAGAGAGTTAGCAGAATGCC
AAGCTTTAGTCGAAGATGCGGATCGCTTGGCCCTCGCTGTGTCCACTATACAGGGTGTCT
CGGAGATGGTCGCCGAGTACCGCGCTCTGTACGCTGATGTTAGACTGAGACTAGACCTGG
CTAGAGCTGAGGTCGTCGGTGATGTCGATACTGCAGTACAAGTCGATACCCTCAAATGGG
AGACAGACGCTGCCCTGCAAGTAGACACCCTCACATCCAAAGAGACATACCGAGTGGAAC
TGGCTTCAGCCGCCAGAGAAACATCAGATGCTCTCGAAGCACTCCGACTTGCACTACAAC
AACAGCCTAAAGAAAACGCCAGTAGTGATGAGTTGGCCACAGCAGCCAAGGACATCGCCA
AGGCTGGAGCCAAACCTGGCCAAACATTGGAGTTGGCCAAACACTTATCCGAACTATTAC
TAACTGAATGTGACGCTAACGAAGAAGAAGCCATGATGAAAGAAGTGGAATCTCTTTCTT
TGAGATACGAAGATCTGTTAACTCAAGCCAAGAAGAGAGAACTACAAATTAATAACTTGA
GGTTGCCACACTCTGCGTCGTACGCGCTCACGTGCGAACACGAGTCCGGTCGATTGACCT
GTCCTCTGTGCTCGGAGCGGAATTGGAAACAGCTTGACAATGACCTGTGGAGGCTGGAAC
AGTGGCTTCAGTTCGCTGAGGCTACAGAAGCATCTAGAACGGACCCGCCTGAGCAGTATG
ATTTGTTGGAGGACGCTATACAGGACCACCGCGAATTCCTCCTAGACCTCGACTCGCACA
AGTCCATCGTGGTATCCCTAAACGTGGTGGGTAGTCACGTGGCCGCGCACGCACACGACG
CACGAGACGCCGCGCGTGTCAGAGCGCGTCTCGCCGCCGCAAACGCGCGCTGGGACCACG
CTTGTACGAACGCGGCTGAGAGGCAGAAGCTTTTGCAGCACGCTTTGGTGCATAATAGAC
AGTTCCATGATATAGTGGTCGAATTAGTCGCCCAACTAGCGTCAGCGGAACGCGGCGTCC
GCGCGCGCGAACCGCTGCGTTTATCACGCCCGGCCGAGGAACTACAACGTGACTTCAGAC
GGTTCAGTGAACTGCGCGACGAGCTGCAGCGAGCCGAGCCGCGAGTACACGCGTTACATG
ACGCCGCTCAGTTGTTACGGACGGGCGACGCACCACCTAATGCTGATGATATCTGTCGCA
GACTAGCGGAACTTCGTCTCCGTCTCCAATCCCTCCGCAAGCTATCCGGTGTGTACGCAC
TGAAGCTCGGCGCCGCACTGGCGCGACGACCCGCGCGACCCACTACCGCGCTCGCAGCCG
TCGCACTCGCCGCCGCACCACAGTTAATGGAGGAGGAGGACGAAGAATTATCGACAATGA
ACCTGCCTCCGTTCGACGAAAACGAGATGGTGGAAATAGATGAGGCGGGCGAAGCGGAGA
CCCTAACCGGCATGCAGCGGGGACTCCGGTTTGTGTGTCGAGTGGCGCGCGCCTCCCTTC
CCTTCCAGGCGCTACTGTTACTAGTGCTAGGGGCCGCCGCTCTCGCCCCCCACGCCAGGA
CAGAGTGCCGCTCGGGACTGGGACTGGAACCCATGCTAAGATATCCGCATGGACCACCAC
CGCTGTGATCTAAACAACACTACACTAGATATTTATCTCAAAATAAAGTCTATACTCGAA
AAGACAACACCAAACTATGATTTAACTTGAGTGTACTATTTTAAATTAAATTATATTTGC
AATTATCCGCCAAAACTCTCAGAATTGCTCTACGGTAAACGAACCGCGATAGTGCCGCGT
ATCTCATGAAACGCGCGTCATTATCGCACTAAAACGCCCGCTTCCCTCTAGGCGGGCGTT
TTGAGCGCTTTCGTCGCCGCGTTATTAAAAACGCTGCGTTCGAGGGCGCTATTGTGACAT
TCCAATGTAAGTCTCCTTGACCGCCGCCTGCGCCCTGTAAATAACAGTTTTGTATATTTG
TTACGATGGAATATTTGATACGATTGAGTTGCAGACGATTGTCGAGGAGACATCAACCGA
AAATGAACGTTAATGATAAATTATTTATATGTAACGTGTCCGTGTAAGTGACGCCGCACA
AACGATATTTATAAACGGCTTAGATACGCTAAAACACGCATTGTTACTTAATAGATATTA
AGGACTGTTTGTAAAGTCAATAAAAGCCTATGCATTGATTAAAAAAAAAAAGACATGCCC
G
(5341 bp)

- SilkBase 1999-2023 -