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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR10726c2_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_L798_04073,_partial_[Zootermopsis_nevadensis]
Ontology
GO:0001523 P retinoid metabolic process
GO:0002020 F protease binding
GO:0004872 F signaling receptor activity
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005765 C lysosomal membrane
GO:0005768 C endosome
GO:0005886 C plasma membrane
GO:0005887 C integral component of plasma membrane
GO:0005905 C clathrin-coated pit
GO:0005925 C focal adhesion
GO:0006897 P endocytosis
GO:0006898 P receptor-mediated endocytosis
GO:0007205 P protein kinase C-activating G protein-coupled receptor signaling pathway
GO:0007275 P multicellular organism development
GO:0007568 P aging
GO:0008283 P cell population proliferation
GO:0010875 P positive regulation of cholesterol efflux
GO:0010977 P negative regulation of neuron projection development
GO:0014912 P negative regulation of smooth muscle cell migration
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0021987 P cerebral cortex development
GO:0030136 C clathrin-coated vesicle
GO:0030178 P negative regulation of Wnt signaling pathway
GO:0030425 C dendrite
GO:0030666 C endocytic vesicle membrane
GO:0032370 P positive regulation of lipid transport
GO:0032374 P regulation of cholesterol transport
GO:0032403 F protein-containing complex binding
GO:0032429 P regulation of phospholipase A2 activity
GO:0032956 P regulation of actin cytoskeleton organization
GO:0034185 F apolipoprotein binding
GO:0035909 P aorta morphogenesis
GO:0042157 P lipoprotein metabolic process
GO:0042953 P lipoprotein transport
GO:0042954 F obsolete lipoprotein transporter activity
GO:0043025 C neuronal cell body
GO:0043235 C receptor complex
GO:0043277 P apoptotic cell clearance
GO:0043524 P negative regulation of neuron apoptotic process
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0051222 P positive regulation of protein transport
GO:0070325 F lipoprotein particle receptor binding
GO:0097242 P amyloid-beta clearance
GO:2000587 P negative regulation of platelet-derived growth factor receptor-beta signaling pathway
Transcript
Level		FPKM:2.85 TPM:2.79
ORF EntryO_TrvaFAMAMG12015_5prime_partial:A_TrvaFAMAMG_TR10726c2_g1_i1
Sequence
(Nucleotide)
GGTTGGTCGGGGGGCTACGGGGGACTGGGTGTCAGCGACGCGACAGGGGCACACGCTGCG
TTACTCATACCGCGTGTTAATAACCTCACTTCGCTCGCTGTACATCCTAAAAGCGGTCGC
GTGTACATGTCCCTATCGTTGGGGACGGAGGACCGCATCGAGTCGGTCCGGGGGGACGGT
GGAGGCCGCCAGGTCCTCCTCAGCGACAAAGAGGACCCTCTGCTGTCTGCACCTACTAGT
CTATGTCTGGATCCCTGGAGTGAGCGCCTGTACTGGGTTAACTCGGGCTCCAACTCCATA
CAGTACCTAGACCTGAAGACCTGGAACTATACTACGTTATCTCTGGAGCTGGGCGCTCGT
CCTGTGTCCGTGGAGGTGTACCGCTCGGAGTTGGTGTACGCGGACCGGGAGCAGAGACTC
CTGCGCAAGTGTCACAAGGACAAGTGTCACAACGCGACCACGTACATGGACCATGCAGAT
GGCGTAGTATCTCTGCGTGTATACGACGCGGCGCTGCAGTCGGCGGGCGAAGCGGGGGGT
GTGGGTGGTGCGGGGGGATGTCTGTCGCGGCGGCCTCCCTGCTCGCACCTCTGCCTGCCT
CTCTCCGAGACGCACTCCGCCTGCCACTGCGCGACAGGATACATCGCTAACGGAACCAAC
TGCACACCTGTGGACGAGGTGGTGGTGTACTCTATGGGGTGGGAGGTGCGCGCGGTGGGG
ACAGAGGGGGGAGGGGACCTCCTCGCCCCGATACCCGGCCTTTCCCTCGCCTCATATATA
GATTACGTCGCAGATGGCGAGTGGTTGTACTGGGTGGACTCGGAGGCGGGCAGCATGTGG
CGCTCGCGGCGGTCGGGAGCGGGGCGCGGGGTGGTGGTGCCGGCGAGCGAGGGGGGCGGC
GGGATGGACGAGGCGGGTGACTGGCTCGGCCCGGCGGCCGTTGACTGGGCCGCCGGCACA
CTGTACTGGACGGAGCCGCGCCGCCGGTTGCTGCGGGCCGCTACTCTCGACGGACGACAT
CAGTACGTCGTGCTTGATACTGACCCGCACGCTGTTACTTTGATGGCTTTGGACGCGGCT
GCTGGGTGGATATTCCTGGGTGGGTCTGGGTGGATACAGCGCACGTCGCTGGACGGCTCC
AGACGAGACCTGCTGCACAACGGGACTCATGTGGAGGACATCGCTTTGGACTTAAAGGAG
CGGTTGTTATACTGGTTGGAGCGAGGGGGCGCGGGGGTGTGGTGCATGCAGTACGGGGGC
GGGGGGAAGAGGGAGGTCGCGCGGCTGCACCACCACCGACCCGTCGCCATCGCTTTGCAC
AAACAACGGATATACTGGCTTGATACTATGGTAGGTCGTGGCTCGGTGCTCTCGGCTCCG
GTTTCCAACATGTCCGACTACCGCGTCATCAAGGACGACCTCGGAGACAGCCTCAAGGAT
ATTATAATATGGTCGAGTGAGTCTCAGCGCGCGGCGGAGTCCCCGTGCCGCAGCATGAGG
TGCGAGGCGCTGTGTCTGGGCGGGACCGCGTCCGACGATGGTGGTGCTGGTACCCCGGCG
CGCTGTGTGTGCCCACACGGGGAACTTGCGAAGGACGGACGGTCTTGCACACCATACAAG
TCGTTTGTGATGTACGCTCGCGTGTCTCAGATCGACTCGCTGCATCTCGACGGAGGAAAC
CTCAACGCGCCCTTCCCGCCGATCAAACACAAAGAACTAATGCGTAACGCCATAGGGCTG
GCGTACGACTACAACTCGTCGACGCTGTTCTATTCGGACATACAGCGCGGTGCCATACAC
GCAGTTCACTTCAACGGAACCAACCATCGCGTACTGTACACCAAGGTGGGTGCAGTAGAA
GGCATGGTGTACTCGAGTCGGACACAGTCGTTATACTGGACCCGCACGAGCGGCGCACTT
GTGGCAGGCCGCCTGCCGCCCACCGACCCGCCGCGCACGCTGCTCAGACTCACGCACGGC
GACCGACCGAGGGGGATCGACTTCGACCCCTGTGAACTTCGCATATACTGGACGAACTGG
AACGCGGCTCGTCCGAGCATCGAGCGCGTGTTCGTGTCGGGTCGCGCTCGCCAGCCGCTC
GTCACCACGGCCGTGCTCATGCCCAACGCACTGGCGCTCGACCACGCCGCGCGGCGCCTC
TACTGGGCCGACGCACGCCTCGACAAGATAGAACGCATGTACTACGATGGATCGCATCGA
CAGGTGGTGACGTCAGAAGGCACGAAGCATCCATTCGCAGTGGCAGTGTCGGGTGACTGG
CTGGTGTGGTCGGACTGGGTGGGGCACGGCGTGATGAGAGCAGACAAGATGGCGGGCTAC
CCACGTGTCACCCTTGCACCGGACCAGAGACCGATGGCCGTGATTGTGGTCACGCCGGAT
GTACCTATCTGTTCATCGGATCCTTGCGCGACTCTAAACGGTGGTTGTGCGGAGTTATGT
TCTGTGACGTCACGTGGCGTCGTGCAGTGCGCGTGCGCGGCCGGCGGTGTGCTCGCGGAG
GACGGGCGCGCATGCACCCCACCCTTACAGTCCTCTTCATCCTCCTCGTCCTCCTCGTGC
CCTCGCGGACAATTCCAGTGTCGCGAGGGAGGCTGTATCCCCGAAGAGTTGGTGTGTGAT
GATATACCGCATTGTACTCATGAGTCTGATGCTAGTGATGAAGACTTGTTTTACTGCACA
TCCCGTCTATGTCCTCCGGATACGATCCCGTGCGGCGCGGGCGGGCGCTGCGTGTCGGAG
GAGGGGCGCTGCGACGGCCGCATCGACTGCGACGACGCTACCGACGAGATGCACTGTGAC
TGCGGACCGCAACAATACAAATGCGACAACGGTCTGTGCGTGAGTGTGGGTGCTCGCTGC
AACGGCGCGGTGGAGTGCTTCGACGCGTCAGATGAGCGTGGCTGCGGTGCGGCGTCGTGC
GCGGCGTTACATCCCGACGCGCTGCCGTGCCGAGACCGCGCCGCTTGCTACCTCGCAGCC
TGGGCCTGTGATACGTACCCCGACTGCGACGACCGCACTGACGAGATGCACTGCGAACAA
TACCACACAGATGCGCCCGTAACTGAAGTAATAGTTGACACTCTGGACGAGTTATCCCCT
GAGCACTGCGGGGAAGGACAGTTCCGCTGCGGGGGTGAGGCGGGCGGGGCGTCGCGCGGG
GGGGTCGCCGAGTGCATCCCCGTCGAGTGGCGCTGTGATGGACGAGTTGACTGTACTGAT
GGCAGTGATGAAACTATACACTGTGGTCACCGCATGCACAACGTTTCGTGCGGGCCGAAC
ACGTTCCAGTGTGCTGGCGGGGAGTGCGTCCCGCTGACGGCGCGGTGCGACGGGACCTCT
GACTGCAGCCACGGAGATGATGAGACGGACTGTCCCTGCGCGCCCGACACCTTCGCCTGC
GCCGCCTCCTCGCACTGTCTGCACGCTAGTCTATACTGCGACGGCGACATTGATTGCGAG
GACGGTTCTGACGAGCCTGCGGGCTGCTCCCCCTCTCCCTCTGCCGGCGTCCCCTCCCCC
GCGCACCCCCTATGCGCCGCCTCCCCCGGGGCGGTGTACTGCGCGGGTCGTTGCGTGCCT
AACGAGCTGGTGTGTGATGGACGGAACCACTGTGAAGATAATGGAGGTCAAGGAGCTGGG
ACTGATGAGGACCCAGCTATTTGTAGTTCTTACTCGTCGTCAACGGACACAGCAGTAGAC
ATAGTGTCAGTGTGCGCGCGGGACGAGTGGCAGTGCCGTGACGGAGGCTGCGTGACGCGA
GATGCACTTTGCGACGGGAACAGAGACTGCGAGGATTATAGCGATGAACACTCTTGTGAC
GTGAACGACTGCGCGTCGCTGAATGGCGGTTGCGCTCACAACTGCACGGACCTGACGGTG
GGGCGCGCGTGCTGGTGCGGTGTTGGGTGGCGCGGAGTGGGCGGGGCCTGCATCGACGTC
GACGAGTGCCGCGAGGACGAGCCCTGCGAGCAAAACTGCAGAAACACGTTGGGTAGTTTC
GTGTGTTCCTGCGTCGCCGGATACAAACTGATGGACGATAGAGTCAGCTGCACTCCTGTG
TCTTCGATAAAAGCATCATTAGTGTTCACGAACCGCTACTATATTCGTCGCGCGTCCCTG
CACGCCGGCGCCAGCTCGCTGCTCGTGCACAACCTGACCAACGCCGTGGCCCTGGACGCG
CACTGGGCCAGCGGATGTCTCTACTGGAGCGACGTCACATTACTCGGCTCCTCCATCAAG
CGCGTCTGCCGGCCCCTGAGCGGCGTGCCGAAAGTGCTGCACGCGGCGACGCTGCAGAAC
CCGGACGGACTGGCGGTGGACTGGGTGGGCGGGAACCTGTACTGGTGCGACAAGGGCACG
GACACCATCGAGGTGTCGCGGCTGGACGGGCGGCACCGGCGCGTGCTGGTGCGCTCGGGA
CTGCAGGATCCGCGCGCGCTGGCGCTGCTGCCGAGCCGCGCGGCGCTATACTGGACGGAC
TGGGGCGCGTCGCCGCACATTGGACGCGCCTCTATGGACGGCGCACACCCGCGCCTCATC
GTCACGGCGGGGCTGGGCTGGCCCAACGCGCTCACCGTCTGCCACGCCTCCAACGAGCTG
TACTTCGCGGACGCGCGCGAGGACTACATCGCTGTCGCCGATCTCGACGGAAACAACCTC
AAGATACTCTTCTCCAGAGAGACGATGCCGTGGTTGCGGCTGCACCACGTGTTCGCACTG
AGCGTGTGGGACGGACGCGTCTACTGGAGCGACTGGGAGACCAGGGCCATCGAGTCCTGC
AGGAGGAGACCCAGACACAACTACAAGGAGTCTAACGCGACATTAGAGGAGAGTTCAGGC
GGCGCGTACGAGTGCGAGGTGGTGGTGCGCACCGTCCACAAGCCCATGGACCTCAGGGTG
CTGCACCCCGCCCGGCAACCGCCGCTACCCGAGATATCCGAGCTATGTGCGTCACTAAAC
TGTTCCGGTCTGTGCCTGCTGTCGGACGGGGCGGCGGGGGCGGACGGGGCGGACAGTGCC
GTGACCGCGCACTGTGCGTGTCCGGAGCACTGGGTGCTGGGTCCGGACGGGCGCTCGTGC
GTGCACAACTGCACCGCCGCACACTTCGTCTGTCGCACTACGCTTAAGTGCATACCGTAC
TGGTGGCGATGTGATACTCAGGACGACTGCGGCGACGGTTCAGACGAGGGCGCACTGCCC
TGCGTTCCACTGCTCGCCTGGACAGTTCCAGTGCGACGGCGCGCGCTGCCTGCACCCCGC
ACACATCTGCGACGGCACGCCGCACTGCAGCGACCGCAGCGACGAGGCCGACTGCGACCG
CTTCACGTGCCTCGCCGCGCAGTGGAAGTGCCGCGGGAACAGCACCGCGCGCGTGTCGGC
TCGGTGCGTGCCCGCTGCTGCGCGCTGTGACGGAGTGACGGACTGCCACGACGGGGACGA
CGAGGCCGACTGTCCGCCGAGGACATGCCCGCCGCATCATTTTGAATGCGGCGACGGTAC
ATGCGTGCCGCTGGTGTGGGTGTGCGACTCCGACTGGGACTGCGCGGACGGGGCGGACGA
GGGGGCGGATGGCGGGACGGCGTGCAGCGCGCGCGCCTGCTCGCGGGACGAGTTCCGCTG
CGGCTCGGGGCGGTGCGTGCCGCGCGCCTGG
(5671 bp)

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