SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR10723c1_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(XVIII)_chain-like_[Bombyx_mori]
Ontology
GO:0001525 P angiogenesis
GO:0005198 F structural molecule activity
GO:0005201 F extracellular matrix structural constituent
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005582 C collagen type XV trimer
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005788 C endoplasmic reticulum lumen
GO:0007155 P cell adhesion
GO:0007165 P signal transduction
GO:0007275 P multicellular organism development
GO:0016021 C integral component of membrane
GO:0030154 P cell differentiation
GO:0030574 P collagen catabolic process
GO:0031012 C extracellular matrix
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:3.17 TPM:3.11
ORF EntryO_TrvaFAMAMG11990_5prime_partial:A_TrvaFAMAMG_TR10723c1_g1_i1
Sequence
(Nucleotide)
CGAGAAGACTGAGTACTGCGGGTAGGTTAAGAGCAGACAAATCTGTCTACCCTCTTTCTC
GCTCGTGTTGCTACCCGTTTAGTAAATGCGTAAATGATATAACCGCGATTGTTTTTTTTT
ATATTATACAAAATGGAGTTGTCAACTGGGCCTGGAGTCACTTTTCACAAAAACATTAAT
TCACATCTCTATAAAATATGTCACATAGTATTTAGACTTCACAAGAAAATACTTTTAATA
GATTTTTATAGTTTCCAAATCAGTATTAAAGTTTTCCCTAGTTTTCACAGTTTTTGGTCT
TAGCATAATACACATAATCTCATATATTAAGTTTTACTCCATTAAATATACTATGTATTG
TGTAATATTAAGGACCGTTGTTTTCTTTTGCTGTGTCTAGCTCGTCTTTTCGACTGTTTC
TTATATCTCGAATCGTGTGATGTTTTTTCAACGCAAAGTACTATTAGTTCTTTGTCACAG
GACATTATTCTTTGTTCTAACAATTTGTTAACAGGTGACGCTATACCGAATACGTCTTTG
CTATCCGACGTCCATTCATTACAAAATGCTTTAACTGATCTGTTTCCATGCTCATCTGCT
CCAAGCCACACTTCTCGGTTAGGCCAATTTGCATCAACGAAAATATTTTTGTTATCAAAA
CTGTAGATGTTAGCTTGAGGTTTGCCGCGGCTAGAGTAGTCTTCGGTAAATATACTTTTC
CAGGAGGGAAATACGACTTTTCCATGCAAATTAGTGACCGGAAGGTGACGGTCTGCTGGG
GATACTATTGTGGTGAGATCAGTTATACCAATAGAAAGTACAGCAACAAAAGTACTGTTG
TAGCCGAAACTGTTAGCCTGTCTGTAGCATTCATCGTCAACTCCTCGCAGACCGTCGGTG
TGGGTAGCAGGCATTTTACCGGAATAGGGCTTATTTAGGGCAGCTAAACGGATCGTTCCT
TTTGGAATTGAGTGGAGGTGGAGTGGTTTATGAGTATGATTTGGTCTTGGTGTCGTTTTA
ACAGTTGGTTCATTTTGCGGCGGTGCACCAAAATTAATACGTTCCCATATGTTGCCAACT
CTGAGCAACAAAAGCCTGTCTTGTAGAACATAAGCCAGAGTGCCTTCTGGTATTTTTGAA
GCTCTCTTTAACAGCCCCTTGTATGTCTTAAAAATAACTGTATAAGATTTAAAGAATCCT
TCATCGTCGTCATGTATCTCGTACTGAATTTTGTCATCTGGATCAACTTTAACTATCTCT
CGAAGTATTCCCGGTTCTCCTCTTGGTCCTTCTATCGATACTCCATGTGAGCCTGGTTTA
CCATCTCTTCCCGCTCGTCCTGGAGCACCAGGTGGTCCGGGAGGTCCGGGAGGTCCTCGA
TGCCCAGGAGATGCAAGATTAAGTGGTTGATTCTTAAGGCACGTGTCGTTACAAGTCCCT
GGAGCACCTGATGGTCCTATAGGTCCCATAGGACCGACTGGTCCAGAAACACCAGGTATT
CCTCTATCTCCTTTTTCACCTTTTAGCTTAGAAATATCTACTTCTGGTGCTCTTTCGCCT
TTTTCACCTTTCTCTCCTGTGTTACCTTTTGGTCCCAGTGCTCCCGGAGGACCCTTCATT
AAAGGTATTTGAGAAGCTGGTACTGTTCCTGCAGGTCCAGGTTCACCTTTCGGTCCTTTA
GGTCCAACGGCGCCGGAAGAACCTTTTTTTCCTGAGATTCCAACTAAGCCTCGTTGTCCA
GGTGCTCCATTTTTTCCAGGAGTCCCTGGTCGTCCTGGTCTACCTGGGAAGCCTAGTTCT
CCTTTGTCTCCCTTTGGACCTTTTTCGCCATGATCCCCCCTGGGTCCCTTGAATTTTTCA
ATGATGGCTGCCTCTATCACAGGATCTATATTCTCATCCAGTATTGAAGCTATACTAGCT
GGCAATCCTGCTAGACCTGGTGCACCTTTGTCGCCTTTTAGACCCATTCTGCCATCGAAT
CCATTTCTACCATGCATGCCAGGTGTGCCATCGATTCCAGCTTCTCCTTTGTCACCTTTT
TTGCCCACATCACCAATTTCACCTTTTAAGCCTTTTTCTCCTTTATCACCTTTTAGTCCT
ATATCTCCTGGATCACCCCTTTCTCCTGTATCTCCTCTTGGCCCACGATCTCCTGGTAAT
CCTGGTGGACCTTGATCTCCTTTTGGCCCAGGTATTCGAATTTGTCGAGCTTTTCTGTCA
TCTTCTGATTCCATATATCCGGGGCCCGGTGGTCCAGCAGGACCGACTGGTCCACGCTCT
CCAGTTGGGCCACGTTCACCGTCTCTTCCTGGTTGTCCATGTTGTCCTGGTCGACCGTCT
TGCCCAGCTTCACCTTTTAAACCTTGTTCACCGTTTTTACCATCTGCACCTGGGTTTCCT
GGTGGGCCATCACGTCCTCTTTCTCCCTTTGATCCATCAAAACCAGGTGGGCCTC
(2455 bp)

- SilkBase 1999-2023 -