SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR10716c2_g1_i5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_basement_membrane-specific_heparan_sulfate_proteoglycan_core_protein-like_isoform_X3_[Bombyx_mori]
Ontology
GO:0001523 P retinoid metabolic process
GO:0001525 P angiogenesis
GO:0005509 F calcium ion binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005604 C basement membrane
GO:0005615 C extracellular space
GO:0005796 C Golgi lumen
GO:0005886 C plasma membrane
GO:0005925 C focal adhesion
GO:0006024 P glycosaminoglycan biosynthetic process
GO:0006027 P glycosaminoglycan catabolic process
GO:0008022 F protein C-terminus binding
GO:0022617 P extracellular matrix disassembly
GO:0030198 P extracellular matrix organization
GO:0030203 P glycosaminoglycan metabolic process
GO:0031012 C extracellular matrix
GO:0042157 P lipoprotein metabolic process
GO:0043202 C lysosomal lumen
GO:0044267 P cellular protein metabolic process
GO:0046872 F metal ion binding
GO:0070062 C extracellular exosome
Transcript
Level		FPKM:20.03 TPM:19.62
ORF EntryO_TrvaFAMAMG11907_complete:A_TrvaFAMAMG_TR10716c2_g1_i5
Sequence
(Nucleotide)
TTTTTTTATTTTGACAATAATTTTCATTTCTTAATTGTTAATTTGCATTTGTTCACTTAG
CAGATACACAAAAACATTATTACATAGGCAGGTTCGTTTACAACGGTCATCGCAATAGAA
ACATCCACTTTAACTAATTTGAAAGAGAAGATATTAGTATGTACCTACTATTATTATAAC
AACAATATTTATTTATTTTTGTATTCAAAACTTCTCAAACATGTAGAAAGTTTCTGAAGA
AACAATTTTATTTCATATAAATAAATGCCATCGCGCTGATAAGTGTTTATTGTAACGGCT
TATTTCAATTTAATTCAAAACTTTTCATAAAAGCAAGTTTACGTACCTACCTAAAAATAA
AAGCAAAATAATATGGCAGTGGTATAAAAAGTAAAAAAAAAACAAGTTCCTTCGATCACG
TTTGGCACATTCAAAATCTTATCACTGGGTGCAAAAAACATTAAATAGTGAACGAATTTT
AAATTGTATTGAATCTAATTAACCTCGCGAACAAGCTGAAAATACAAAAGATTTTAAACA
ATTAAAAAAAGAACGTTTTCAATTATTCAAATTCCTAACTACGTTATTATTATTATTTTT
TTCATTTCCTTTTCGATTCTTATGGCACCAAAACCGCTCCACTCTCCGAGCACCCCGCAA
CTTGACGCAGCCATTACGAAGTCCAACCACGTTAAATTGATTATAAGTAACACTTAATTT
AATAAAAAATAATAATAAACTACGTTAAAGACGTAAGGATGATCGAATCAATCTTAATAC
TAATTACAACGGTAATAAAATGTCAATTTATTGTTTCACTACACATTCCAAACCACAACG
AATATTATCTTAGAAGACTATTGAGGAGTTATAATCTAAATTTACCATTGAATAACGTAA
ATAATGAACTTGAAAACTCACGATATAATATGTCAATTTCATTTGATTTACACTCATTAT
AAATTAGATAATAAATCCCCAAACAGTCTATTTTATGAGATTATTATATTTTAAATATAC
GATGCAATCCGGTTTCTATGAAAGCGAAGAGTTTTTTTTATTTCGTAGTGTCGTTTCGTT
GAATTCACATCAGTAGTCTCTGCAGAGCTGCGTGTTCCTTCCGGCGACGGCGACGTCCCG
CAGCTCGAGTGCCCGGTTGTTGCCGGTCAGCTCCACGTGCTCTATGCAACCGATGAAGCC
TGGGTAGCCGTGGATGTTCACCCAGTTCGGCATTCCACCAATGTAAATGTTGGAATCAGC
ATTCATGATGTTCGTTATACCAGTTGCAGGCGCGCTCTTGTCAACACCGTCGACAGTGAG
CATGGCGTGACCATCCTCGTACAAGTGGACGGCGATCTGGTGCCTTTCACCGTCGTTGAT
AGGAACATCAACGAGAATGGAAGACTCTCCACCGCCCAAGTTCCAGTCGAATATCACGAA
GCCACTTTCAATTCTTAGTATAAAGTAGTCTCCTTCATTAGGTGATCCTTGTCCTTCTCT
CTGGTAGGCGAGGACACCATCGTTGGTGGTGTGGACGGCGAGCGCGATGACCGCGGGGTC
GCTCGCCAGTTCGTCGTAGCGGAGGAGGTTGGCCGGTAGTTCTATGTAGCCGTTACCGTT
GAAGCCGACGCTCTGTCTCAATTCCAGGGGCATCTGACAAGAAGCTCCGGCGTATCCCAA
GGGACAGTCGCAGGTGTAGTTCAACCAGGAGCCATAGTCGGGCTTGCAGGTCCCTCCGTT
GCGGCAGGGGTGCAGCGAGCACGGGTTGACGGGCGGCGGCGGCGACATCAGGTACGACGC
GACGCGGCTCTCGCAGTACGTGCCCGTGTACCCGGCCGGACAGATGCAGTTGGTCGACTC
CGACGAACAAGAACCGCCGTTTTTACACTCGCATGTTTCCGAGGCTTGAATGTCTCCGCG
GTCGTATGTGTTGCACTCTTGAATGTTTGATGACTTGATTGATGAGTTGATATCTACGGC
GTTGCTGTTCAGTACGACATCCTTGATGCATCCGCTGAAGCCAGCGCTCACCAAAGTGTT
AGGATTGATAACCACAGTTGAGTCATCGACGCCTCCGACAAACATGGGAGTCTCAAATCT
GAGGCTTTCAGTTGGTCTGTCGAGATTCTTTTCAAGCGTATTCGAGGTGCGTCCAACATG
AGTCTTCATAGACACGGATCCAGCCAAGCGAGCGATCTGAATGTCGATCCATTGGTTCGC
TGGCAGTGGTTTTTCGCTAGTCAATATTACTGGTGTGCTTCCAGATCCAAGGAAGTAACG
GAACTCAAGTCTTCCATTGCGCACAGTGAGCGAGGTGAATCCATCTTGTCCTCTCGCAGA
CTCGGCGCAGTACATGATGATACCATCAGTGACGGGAGTCGCCGCTCTGATCTTCAACGA
CATCTTCAAGGATCGAGACGGCGGCGGCGCGTTGATAGCTAGGAATGCGCTCCCGGTGAA
AGCTGGGTACGCTATCAGTTGTTTAGTTTCGCAATTTCTGCCCGTGTACGACATGGGGCA
GGCACATTTGTATCCGTCGGCTGTCTCGGTGCACTTGCCGGGTCCGCAGAGGCCTGCCCT
GCAAGCCTCGCCGGTCCTCTCGCAGTTCCACCCAGCGTACCCAGGGGCGCAGATGCACAG
GTAACCGCGTTCGTTACGGGCTTCTTGACAGATTCCATCGTTGACGCAAAGATTGGGAGT
GCAGGAGCGACATTCACCAACTTGATATTGTTCTAGACTGTCCAATATGATGTTCTTTTC
TTCGTGTCCAAGGATCAGATTGCTCACACAACCAATGAATCCATCGGTTCCTGCAAGCTC
AGCCGGTAGTTGATCGATATCAGGTACTCCTCCGATGTACATCGGCTGGCTTAGTTCAAG
CACCGACCAATCTTCCTGAGAATCGGTTATGAATGGTCCGGTGTCGTCGACGTCCATTGT
CACCTTTGATGAAATCCTGCTAACCCTAATAGTATGCCAAGTGTTGAGTTGCAGTGGTCT
GTCTCCCCTCACTATGACGGGTTCAGCGCCAGCATCAAATATGAACTCTGGGATTCCGTC
TAACAACCTCAGACCAATGTAGTCGCCCATCCGTCCCTGGTTCTGACTGTTGTACAGGAT
CAAACCATTGTTATCTGTAGGCTTGAAGTAAACTTCGATATCGAATTGTCTGTAAGCATC
TTTGAGCGCCGGTAGTGACAGCCAGCTCTTTCCATCGAACTGTGGAACTACGCCTTCCAC
TTTGAGGATCGCCTTGGCCGCCACTGTGACTTCTTGGTTGCTCACTTGGCACACGTAGAT
ACCGGCATCGGCTTCAGTCACACTTTCTAAGTGAAGGATTGGCTGGTTGTTTCGCACTTC
AGCCGGCAATGGTTGGTACTCTCTCTTCCATTCAATAATGACTGGTTCGTTCAGGTCGTG
TCTGCAGGGAAGGTCCACAGACTCGCGGAGGTGAGCCGTGTAGTGAGATATGGGTCCATC
TCTGTTATCCGGGTAGATGGCGTTGCTTGAACCTGGTTCTACTTCTAATACGAAGTCATC
GTATGAGGAGACGCCATATGGATCGGTACCGATGCAGCGGTAAACACCCGCGTCGGATTC
TTGCACTCCGTTAATCAAGAGTCGGGAACCTCCTCCGAATGGATTTGTAACGAGGTACAG
ATTAGTATCAGGTCTCTCCCATCTGAGGGTGACGTCACGGGATCGTCCTATACAGATTAC
TTCAACGTTCTCGGACACCCTGAACTTCCTACGAGGCTGGTCGATGGTTACTAGAGAAGC
GGAGTCAGCGTCGCGAGCTCCTAAAATACAATATTTAGATTTTATTTTGTGACTAACACA
GTTTATAGTTTCAAGAACATCACCGGCATACCTATTCCATTTTCAAAAACCCTTACCAAA
ACCTGTATTAAATTTGAGAATTACGTATTTTAACAGAAAAAAAAACACAGAAATTAGACA
GCAGCAGATATCAAATCAGCCAACACCAATTTAACGAAAGAAATTCGAGCCTTTGTACAT
CATTACTTTACCAATCCAATATATACCATCAAACCGTACATTTCAACCAAGATATTGACT
TTAAAATATTATCCTATAGTATACTAAATTTATTCTAAAATACCTACCCGTATTTACACT
AAAAAAACTGTAAAACACAATTTTACTAAAACTGACCTAATCTATTACTGGAAGCAAATT
ATCTAAAACATTGGGAAATAGGTACAAAAAATTGAAGGATTCCGATATTAATTTACCCAC
AGTGACATTATAAAAAATTGTATGTCATTGTGTGTATTTCGCCATAGGTAGAAGTAAGTA
GTAATTTAGTATATTT
(4336 bp)

- SilkBase 1999-2023 -