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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR10290c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_SYF1_[Amyelois_transitella]
Ontology
GO:0000349 P generation of catalytic spliceosome for first transesterification step
GO:0000398 P mRNA splicing, via spliceosome
GO:0000974 C Prp19 complex
GO:0001824 P blastocyst development
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0006281 P DNA repair
GO:0006283 P transcription-coupled nucleotide-excision repair
GO:0006351 P transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0006974 P cellular response to DNA damage stimulus
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0021987 P cerebral cortex development
GO:0071010 C prespliceosome
GO:0071012 C catalytic step 1 spliceosome
GO:0071013 C catalytic step 2 spliceosome
GO:0071014 C post-mRNA release spliceosomal complex
Transcript
Level		FPKM:3.87 TPM:3.79
ORF EntryO_TrvaFAMAMG11273_complete:A_TrvaFAMAMG_TR10290c0_g2_i1
Sequence
(Nucleotide)
TTTCGCGTTGTTTTGATCAAAGTTTTGATCATTTGGTAAAAGTTGTGGATAAATTGGATA
ATAAAAGTAGTAAACTTTTATTCGAAAACCAACTAGACAAAAAAAAGAAGCTAAAATGCC
TCTTCTAGATGGAAAAGAAATAGACATATTCTTTAGCGAAGAAGATTTACCCTACGAAGA
AGAAATCTTGAGAAATCCATTTTCTGTTAAACATTGGTTAAGATATATTGAGCATAAGAA
AAAAGCTCCTAAACATGAAATTAATATGATATATGAGAGAGCTCTCAAAGAATTACCAGG
ATCTTTTAAGCTATGGTACAATTACCTTAAATTAAGAAGAAATCAAATAAGGGGTCGCTG
TATAACTGATCCATGTTTTGAAGATGTAAATAACTGCTTTGAAAGATCATTAGTGTTTAT
GCATAAAATGCCAAGAATATGGATGGATTACTGTTCATTCTTGACAGATCAATGTAAAAT
AACTACTACTAGGAAAGCATTTGATAGTGCACTGAGAGCTTTACCTATAACACAACATCA
CAGAATATGGCCTCTTTACTTAAATTTCTTGAAAAAACACAATATTCCTGAGACTGCAGT
CAGAGTATTTCGAAGATATCTTAAATTATGTCCTGAAGACACTGAAGAATATATTGACTA
TTTAACATCTATTGATAAATTAGATGAAGCTGCAGTTAAATTAGCTCAATTAGTAAATAA
TGAAAATTTCCAGTCAAAGCATGGTAAATCTAATCACCAACTTTGGAATGAATTATGTGA
ATTAATTTCAAAGAATCCTGATCAAATTCATTCTCTGAATGTTGATGCAATCATCAGAGG
TGGACTGAGGCGTTATACAGATCAACTGGGTCATCTGTGGAACTCTCTTGCTGATTATTA
TGTTCGAAGTGGCCTTTTTGAAAGAGCTAGAGATATTTATGAAGAAGCCATACAAACTGT
AACTACAGTGAGAGATTTTACTCAAGTGTTCGATGCTTATGCACAATTTGAAGAATTAAG
TTTAAGTAAAAAAATGGAAGAAGTGGCTAAGAAACCAAATCCATGTGAAGATGATGATGT
TGATTTGGAACTTAGATTGGCAAGATTTGAATACCTTATGGAAAGGAGACTATTACTGCT
TAATTCAGTTCTACTCAGACAAAACCCACATAATGTTGCTGAATGGCATAAAAGAGTTAA
ATTGTATGAAGGCAAACCCCATGAAATAATAGACACATACACTGAAGCAGTTCAAACTGT
AGATCCTAAATTAGCAGTAGGCAAACTATACACATTGTGGGTTGGTTTTGCTAAATTTTA
TGAAAATAATGATCAGATAGAAGATGCAAGGCTAATTTTCGAAAAAGCAACACTAGTTGC
TTATGTTAAAGTTGATGATTTAGCTTCTGTATGGTGTGAATGGGCTGAAATGGAAATCAG
ACATGAGAATTACGAACAGGCTTTAAAATTGATGCAAAGAGCTACAGTTTTGCCCAGTAG
AAAAGTGGCTTATCATGATGATACTGAAACTGTACAAATGAGATTGTATAAGTCACTAAA
AGTTTGGTCCATGTATGCAGATTTGGAAGAAAGTTTTGGCACTTTTAAATCATGCAAGGC
TGTATATGATCATATTATAGATTTAAAAATTGCTACTCCTCAAATTATAATTAATTATGG
ACTATTTTTAGAAGAACACAATTACTTTGAAGAAGCATTTAGGGCATATGAAAAAGGCAT
TGCATTGTTTAAATGGCCCAATGTGTATGACATCTGGAATACTTATTTGACAAAGTTTTT
AAAAAGATATGGCGGTTCAAAACTAGAAAGAGCTAGAGATTTATTTGAACAGTGTCTTGA
ACACTGCCCCAGTGAATTTGCAAAGTCAATATTCTTACTCTATGCAAAGTTAGAAGAAGA
GCATGGCTTAGCCAGACATGCAATGTCAGTTTATGAGCGTGCCACTACTGCTGTGCAGCC
AGAAGAAATGTTTGAAATGTTTAATATTTACATTAAAAAGGCTGCTGAAATTTATGGAGT
ACCAAAAACCCGACAAATTTATGAAAAAGCTATTGAAACTCTACCAGAAGAGAAGGCAAG
AGAAATGTGTATTCGATTTTCTGAAATGGAAACCCGTTTAGGTGAAATTGATAGAGCTAG
AGCAATATATGCTCATTGTAGTCAAATGTGTGATCCCAGGATTACAGCTGAATTTTGGAA
TACTTGGAAAGAATTTGAGGTTAGACATGGTAATGAAGATACAATGAGAGAAATGTTAAG
AATCAAGAGAAGTGTGCAAGCCACATACAATACACAAGTGAACATGATGTCTGCTCAAAT
GTTGAGCTCTGCAGCACAGGCAGCTGGAACTATATCAGATTTAGCTCCTGGTATGAAAGA
TGGCATGAGAATGCTTGAAGCTAAAGCAGCAGAAATGGCAGTTCAGAGTAAGGGTAACAT
TATGTTTGTCAGGGGCGAAACTCAAGGTCTCAAAGAAAGTTCTGACAAGGTCATTAATCC
TGATGAAATATCAATTGATGATGAATCTGATCATAGTGAAGAAGAAACAGAGGACCCGAT
TCAGAAGAAGGATGTACCAGCTGCTGTATTTGGAGGGCTTGTGAAGGATGTTGAAGAATA
AATTGGAATATGATAATAATAAAACAAGGAATTTAAATAATCAAACTTTTAATAAAAAAT
AATTATTTACAAGCCTTCTTTTTATTATGTACAACAGAAA
(2740 bp)

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