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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR10279c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_transcription_elongation_factor_SPT6_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0002805 P regulation of antimicrobial peptide biosynthetic process
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005634 C nucleus
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006139 P nucleobase-containing compound metabolic process
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0008023 C transcription elongation factor complex
GO:0030707 P ovarian follicle cell development
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032968 P positive regulation of transcription elongation from RNA polymerase II promoter
GO:0035101 C FACT complex
GO:0035327 C euchromatin
GO:0035363 C histone locus body
Transcript
Level		FPKM:10.28 TPM:10.08
ORF EntryO_TrvaFAMAMG11261_complete:A_TrvaFAMAMG_TR10279c0_g1_i1
Sequence
(Nucleotide)
CTGACATTTTCGTGAAAACTGTAAACGATAAGCTTTTTATTTTCTTAATTTTAACTTTTT
ATGTAGTTTAAAATTTAACTTAAGCCTAGATTTATCGTGATTTTAGTTTGTAGCGAGTTT
CTAGTTTAACTTTAAAATGTCAGACTTTCTAGAATCCGAGGCGGAGGAGAGCGAGTTGGA
TTCGGAGGCAGAGGAACAGCCAGCAGAACGTAAGAAACACAAAAGAAAAGCCGTTCAAAG
TGACGACGAAGACGAAGAAGAAGAAGATGACGAGGAACGACTCCGTGAAGAGCTCAAAGA
TTTGATTGATGATGCACCAATAGAGGAATCAGGTAGTGATGGTGAGGATTCAGATGCCAG
TGTCGGACCGAAAAAACGAAAAAAAAGTGATGACGAACTTGATGATAGACTTGAAGATGA
AGATTATGATCTTATTGAAGAGAATCTTGGTGTTAAAGTTGCAAGAAATAAATTCAAACG
TCTTCGTCGTTTGGAAGATGATGACAGTGACAATGAAGCACCGGATGACCCTGATCTTGA
AAGGGAGGTCATTGCCGAGAAACTGTTTGTTGGAGGTTCTGATGATGAAGATGAAAATCG
GTCTGACACTGCTGCTCCTCGAGGTGAAGTAGAATATGACGATGAAAATGAGGAATTGGA
ATCAGATGCTGATGACTTCATTGTGGATGATGATGGTAGACCCATAGCAGAACGTAAGAA
GAAACGTAAACCTATATTCACTGATGCTTCGCTACAAGAAGGTCAAGATATATTTGGTGT
AGATTTTGACTATGATGAGTTTGAGAAATATGGTGAAGAGGATTACGAGGATGAAGATGA
TGAGGATCTGGATGAATATATTGAGGATGATGAAGAAGAAGGTGAAAGACGGAGAACTAA
GAAGGGTAAAGCCAAAAGACCGAGCAAGAAATCTATCTTTGAAATATATGAACCCAGCGA
ATTGAAGAGAAGTCATTTTACTGATTTGGACAATGAGATTCGTAAAACGGACGTACCAGA
GAGAATGCAGACTCGTGAAGTGCCTATAACTCCCGTGGAGGAAGGCAGCAACGAGCTGGA
AGATGAAGCCGAGTGGATATACAAGCAGGCCTTCCTCAAGCCTTCCGTGTCCAAGGCGGA
TGCACAGGAGGCCAGGGAACGGACGAGACGAGGTTCAAGTACTATAACAAAGATTCGCCA
AGCGCTCGATTTTATGCGGAATCAAACACTTGAAGTGCCTTTCATAGCATTCTATCGTAA
AGAATATGTCGAACCGGAACTCAGTATAAACGATTTGTGGAAAGTTTACAAATATGATGC
TAAGTGGTGTCAACTAAAACAGCGTAAAGAAAATCTTCTCAAATTGTTCGAGAATATGCG
AGACTATCAACTGGACAAAGTGATGGAGAATCCTGACGCTCCCATACCCGAGAACATGAG
ACTTATTAAAGATGAAGATATTGAAAGACTGAAAGGTGTTCAAACACCCGAGGAATTACG
TGACGTGCACGCCCATTTCTTACTGTACTATTCGTGTGAACTACCCGAAATGCAAAAAGT
ACAACGTATCAAAGAACGTAAGAAGGAAATTGAAGAAAGAAAGAGAATAGCTCGCGAAGA
GGCTGAGAGAAACGGTGAAGATCCCGAGGAGGCCGCAGCGGCTGTAGAAGCTATAGAACC
CGATGAAGAGGACTTAACTGACGTCAAGTACGCGGCCAAATCAGGACCTTATGAACTGTG
CAGGAAGGCTGGGATTGAGCCCCTAGTCCGAAAGTTCGGTTTGACTCCGGAGCAGTTCGC
GGAGAACGTGCGCGACAACTACCAGCGACACGAGGTGGAACAACAACCCGTCGCGCCGCT
GGAGGCCGCCGCTGAATACGTAGCTACAATAGGTTCGGCGACGGAAGTGTTGCGTCGCGC
GGTGTACATGTGCGGCGTGCAGCTGGCGCGCGAGCCTCTCCTTCGAGCCACTCTCAGGGA
CGCCCTTAGAGAGAGGGCCACTATCTCCGTCAAACCCACGCCTAAGGGCTTGAAGGAGAT
CGACGAGAACCACGCTTGTTTTGGTTTAAAATACCTAAAGAAGAAACCAGTTCGTGATTT
GACCGGAGATCAGTTTCTCAAATTGACGATGGCAGCTGAAGACAAACTCCTCGTAGTAAC
TATCAGTGAACAAATAGAAGGAAACACCAGCTCTAGCTATTTGGAAGAACTTAAACAACT
TTATCAAAAGGATGAGTTTGCGGCGACCGTTCAAGCGTGGAATGAACTCCGCGCGGAGGC
TGTCACTATAGCCCTCACCAAGATTGTGATGCCGGAGTTGAGGAGAGAATTACATGCAGT
ACTGTTGCAGGAATCTAAGGATTACGTGTTAAAATGCTGTCGTCGCAGATTGTACGATTG
GTTGAAGGTGGCGCCCTACGAGTCCAGAGTGTCTGATGATGACGACGAAGAGTGGGATGC
CTCAAATGGCGTGCGTGTAATGTCGCTGGCGTACGTCCCGGACCGCCAGCACAGCGCGTT
CGCGTGCGTGGTGGGGCCGGGCGGGGAGGTCGCGGACCACCTGCGCCTGCCGCATCTGCT
GTACCGACGGAACGCCTGGGACGCACTCGAACGGAAGAACAAGGAGGCTGATATGACAGC
GTTGCGCAGGTTCATTTTACAAAAGAAACCGCACGTGATAGTAATAGGCGGTGAATCTCG
TGAAGCGCTCAATATAAAAGTGGACGTGTCCGACTGCGTACAACAGCTAGTAGAAGATGA
ACAGTTCCCGCGGATACCTATCGAGATAGCCGACAATCACTTCAGCAAAATATATAGCAA
TAGTATACGAGGACGGAACGATTTCCGAGAGTACCCAGATATACTAAGACAAGCAGTCTG
TCAAGGTCGTCTCCTACAAGACCCCTTAATGGAGATATCACAGCTTTGCGGTCCCGATGA
AGAAATCCTCTGTCTTCGATACCATCCCTTACAAGACCAGATCGCTAAGGACGATCTTCT
AGAAGGAATAGAACTAGAATTCGTGAACAGAGTCAACGAAGTCGGTGTAGATGTGAACGA
GGCGGTACTTACGGGCAGAGGAACGGAATTACTACAATACGTGTGCGGTCTTGGACCGAG
AAAAGCCCAAGCACTGATAAAACTCTTCAAGCAAACCAATCAGAAACTAGAAAACAGAAC
GCAATTGGTCACAGTTTGTCACATGGGACCGAAAGTGTTCATCAACTGTTCGGGTTTCAT
CAAAATTGATACAAACAGCCTCGGTGATAGTACTGAGGCTTACATAGAAGTACTCGATGG
TTCAAGAGTACATCCGGAGACTTACGAATGGGCCCGCAAGATGGCGGTCGACGCTTTGGA
ATACGAAGATGAAGACGCCAATCCCGCAGGAGCTTTAGAAGAAATCCTAGAAGCACCAGA
AAGACTGAAAGACCTTGATTTAGACGCGTTCGCTGAAGAATTAGAAAGGCAAGGATTCGG
TAATAAAAGCATAACGCTGTACGATATTCGAGCGGAATTGAACTCTAGGTATAAAGACCT
TAGGGTGCCATATCGCTCGGCTACCCCTGAAGAATTATTCGATATTTTAACCAAAGAGTC
TCCTGATACTTTATATGTGGGGAAAATGGTGTTGGCTTCTGTTGTTGGGATCACTCACAG
GAAACCGCAGAGAGAAATGCTCGACCAAGCCACGCCTGTCAGGAACGATGAAACAGGCTT
GTGGCAGTGTCCATTCTGTTTTAAGAACGATTTCCCCGAATTGTCTGAGGTATGGAGTCA
TTTCGATGCAGGAGCTTGTCCGGGCCAAGCTACAGGTGTCCGTATAAGACTGGACAATGG
TCTGTCCGGATATATACATATAAAGAACTTATCCGACAAACATGTCACAGACCCAACGGA
GAGAGTACGGATAGGACAAACCGTACATTGTCGGGTTATAAAGATTGATGTCGAACGGTT
TTCAGTTGACTGCACTTCTAAATCATCGGATTTGGTGGATAAGAATAAAGAGTGGAGACC
TTCAAAAGACCCGTACTACGATCAAGAATCAGAAGACAAAGATATTCGTAAAGAAAAGGA
CGCGAAACAGAACAAAGATCGAATGCAATACGTGAAACGCGTCATCGTACATCCCGCCTT
CCATAACATATCGTTTGCAGAGGCGGAGAAACTTATGGACAAGATGGCGCAGGGAGAAGT
TATTGTCAGGCCTAGTAGTAAGGGCTCTGATCATTTGACCGTAACATGGAAAGTGACAGA
CGGAATTTATCAACACATTGACGTAAGAGAGGAGGGTAAAGAAAATACTTTCTCGTTAGG
TCGAAGTCTATGGATACAGGGGTCTGAATTTGAAGATTTGGATGAAATTATAGCGCGTCA
CGTGACACCTATGGCGGGACACGCACGAGATCTCATAGCGTACAAATACTACAAACCCCT
CGGCGGAATCAGGGATAAGGCAGAGGAACTACTCAAAGAAGAGAAAGCTAAGAATCCTAA
TAAAATTCATTACGTGATCTCTGCTTCAAAGAATTATCCGGGGAGGTTCTTGTTATCGTA
TTTACCGCGAGCGCGAGTCACCCACGAATACGTGTCCGTGTCGCCGGACGGGTACAAGTT
TAGACAGAGGATGTTTGATTCTCTTTCCGGGCTATTAAAGTGGTTCAAAGAGCACTTCCG
GGAGCCGCCGCCGCCTTCGGGCGCCAGTGCCGCCGCCCGCGCAGCCGCCGCCGCTGCAGC
TGCTCGCACGCCGCACGCCTCCACCGTCTACCACACGCCGGCGGCGCACACGCCCGCCTT
CCACACCCCGGCGCACACGCCCGGCCCCGCCTACCTCAACACGCCCTACACGCCCTCCGC
GCAGACCCCCTACATGACGCCCTTCGCCGCCACGCCGCGCCAGCCCGACTTCCTGACGCC
GGCCGCGCCCCGCCTCAAGGCGCCGCCCGCCTACACCGAGCCCGCCGACTGGCAGAAGGC
GGCCGAGGACTGGGTGCGGCACCGCGCCGGCTCGGCTCGCGACACGCCACGCCGCACGCC
GAGACACGACGCGCGCTCCACGCCCCGCCACGACGCGCGCTCCACTCCCAGACAAGACGC
GCGCTCCACTCCGCGGCAGGACGCGCGCTCCACGCCGCGCCAGGACGGGCGCTCCACGCC
GCGGGTGGAGGCGCGCACGACGCCGCGCTACGAGGCGCGCTCGACGCCGCACGCCATGTA
CACACCGTCGCACACGCCGTCCCACACGCCGCACACGCCACACACGCCGCACACGCCGCG
GTCGGGGCGCGCACACTCGCTGCGCTCGACGCCGCACACCAACACGTCGCCGCGCTCCAT
GTCACTTGGGGACGCGACGCCGCTCTACGACGAAAATTGAACATCACCCTGTATTTTTGT
ATCGCGCGGAATGTAAACGATCAATTTGCCGCTGCTGGTTATTGCTTTGGCTTCGATCTA
TTTATTTTTTGTAACGCAAATTAGCGAATGCAAATTCCTATAATTAGAAACATAATTTGC
CGCAAAATTAAATTGCGAAGAAATTTGATAAAGGTATTCAGTACACTAATGTACGCTAAA
AGGGACTTAAAAAGAAAAAGAATAGTCGATCATGACATTTCATTAACCAAGAAAAATATT
ATATTATACAAAGTTGTATGTGATATTGTAATTGCTTCAGTTTACATTACTAATGTATTG
TTTCAAGACAGAAATATATGTAACTATTTATACAATGATCATTTTTATGATGACCACGTT
TGTTTCTTATCTTCTCGTGACTTCAACTGTTAACAGTAAAACATGTTTATGACATTGAGA
GAATGTAGCACGTATATTGTTATAATGAAAGAAATATTTAATTATATATTTATACAGAAA
CGTGTAACTACCTAAGCACGTTAACTAAAAGCAATAATAATGAATAGTTAGTGAAATTAC
ATTAATCTTTGTATTTTTTTTGTGTTTTTAAAGCGGTAGGTTACTTTCCTTAATAGATAC
TGTGAAACTAAAACACCTTTTCAAAAAATACTAATGTAATTTATTAAAATTATTCAACTT
ATGGTAATGAAATCGTTTACCGCATCAAAAATTTTGAACTTAATATCACTTTTATAAAAC
AATTATTTTTATGACTTTATAGATAACTAAAGTGTTTAAACCCGAAATATATTTTGGCAA
AAAACG
(6186 bp)

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